View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10778_low_2 (Length: 387)
Name: NF10778_low_2
Description: NF10778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10778_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 24562743 - 24562385
Alignment:
| Q |
19 |
acaagggttgtgcttggaattgtgatttgcagtttgtgattgtgggcaagaagttattctgcaagatcggaggtgactgggccatctcttgctttaccct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24562743 |
acaagggttgtgcttggaattgtgatttgcagtttgtgattgtgggcaagaagttattctgcaagatcggaggtgactgggccatctgttgctttaccct |
24562644 |
T |
|
| Q |
119 |
taggttggtcgaaggtcatgctatcaagtttgctgctcatcaggaagaaaacaacactgtcctccacacgaggcattttccactgcagtgtactcatagg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24562643 |
taggttggtcgaaggtcatgctatcaagtttgctgctcatcaggaagaaaacaacactgtcctccacacgaggcattttccactgcagtgtactcatagg |
24562544 |
T |
|
| Q |
219 |
agatttgtgaagcccattgagaatgtgcatgggaattatgtgtatcaagttaatcagtatctaaagagttgcctagcaaagagcaaccttgggtagttat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24562543 |
agatttgtgaagcccattgagaatgtgcatgggaattacgtgtatcaagttaatcagtatctaaagagttgcccagcaaagagcaaccttgggtagttat |
24562444 |
T |
|
| Q |
319 |
taagacgtgtagggctgcgctttgtatggtcggtgtcatttcttatgtggtcctctctg |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24562443 |
taagacgtgtagggctgcgctttgtatggtcggtgtcatttcttatgtggtcctttctg |
24562385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University