View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10778_low_5 (Length: 340)
Name: NF10778_low_5
Description: NF10778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10778_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 25 - 325
Target Start/End: Original strand, 49016157 - 49016455
Alignment:
| Q |
25 |
ggcttagatctatacaatggaatccttatgcgctacgttacaacttctagtgcatacttgggaaacacagaggatgctgtgaatttcgacatcacatatt |
124 |
Q |
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| T |
49016157 |
ggcttagatctatacaatggaatccttatgcgctacgttacaacttctagtgcatacttgggaaacacaga--atgctgtggatttcgacatcacatatt |
49016254 |
T |
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| Q |
125 |
accgtagtaaagatccattgactcctaggctttttgaagacataattgaagagatagaacaaattgggttgttcaaatatggagggttaccgcattgggg |
224 |
Q |
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| T |
49016255 |
accgtagtaaagatccattgactcctaggctttttgaagacataattgaagagatagaacaaattgggttgttcaaatatggagggttaccacattgggg |
49016354 |
T |
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| Q |
225 |
gaaaaatagaaacttaggatttgtgggagcaatccataagtataagaaagcaggtaagtttttgaaggttaaagaagagtatgattcacgaggtcttttc |
324 |
Q |
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| T |
49016355 |
gaaaaatagaaacttaggatttgtgggagcaatccgtaagtataagaaagcaggtaagtttttgaaggttaaagaagagtatgattcacgaggtcttttc |
49016454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 22 - 297
Target Start/End: Complemental strand, 490602 - 490327
Alignment:
| Q |
22 |
tgtggcttagatctatacaatggaatccttatgcgctacgttacaacttctagtgcatacttgggaaacacagaggatgctgtgaatttcgacatcacat |
121 |
Q |
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||||||||||| | |||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||| ||||||||| | || ||||||| || |
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| T |
490602 |
tgtggcttagacttgtacaatggaatcctcatgcgttatgttacaacttctagtgcatacttgggaaaaacagaagatgctgtggaatttgacatcatat |
490503 |
T |
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| Q |
122 |
attaccgtagtaaagatccattgactcctaggctttttgaagacataattgaagagatagaacaaattgggttgttcaaatatggagggttaccgcattg |
221 |
Q |
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| T |
490502 |
attaccgcagtaaagatccattgactcctaggctttatgaagatataattgaagagatagaacaaataggattgttcaaatatggagggttaccccattg |
490403 |
T |
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| Q |
222 |
ggggaaaaatagaaacttaggatttgtgggagcaatccataagtataagaaagcaggtaagtttttgaaggttaaa |
297 |
Q |
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| T |
490402 |
gggaaaaaatagaaatataggatttgtgggggcaataaaaaaatataataaggcaaataggtttttgaaggttaaa |
490327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 36 - 236
Target Start/End: Original strand, 9071869 - 9072069
Alignment:
| Q |
36 |
atacaatggaatccttatgcgctacgttacaacttctagtgcatacttgggaaacacagaggatgctgtgaatttcgacatcacatattaccgtagtaaa |
135 |
Q |
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|||||||||||| || ||||| || |||||| |||||||||| ||| | |||||| ||||||||| | | || || ||||||||||| ||||| ||| |
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| T |
9071869 |
atacaatggaattctaatgcgttatgttacagcttctagtgcttacctaggaaaccaagaggatgcattagactttgatatcacatattatcgtagcaaa |
9071968 |
T |
|
| Q |
136 |
gatccattgactcctaggctttttgaagacataattgaagagatagaacaaattgggttgttcaaatatggagggttaccgcattgggggaaaaatagaa |
235 |
Q |
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| T |
9071969 |
gatccaatggctcctaggctttatgaagacattcttgaagagattgaacaaattggaattttcaagtatggagggttacctcattggggtaagaatagaa |
9072068 |
T |
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| Q |
236 |
a |
236 |
Q |
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| T |
9072069 |
a |
9072069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 9059233 - 9059350
Alignment:
| Q |
116 |
tcacatattaccgtagtaaagatccattgactcctaggctttttgaagacataattgaagagatagaacaaattgggttgttcaaatatggagggttacc |
215 |
Q |
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|||| ||||||||||| ||||||||| ||||||||||||||| ||||||| | |||||||||| || ||||| ||| | || |||||||||||||| || |
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| T |
9059233 |
tcacgtattaccgtagcaaagatccaatgactcctaggctttatgaagacgtttttgaagagattgagcaaatagggatttttaaatatggagggttgcc |
9059332 |
T |
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| Q |
216 |
gcattgggggaaaaatag |
233 |
Q |
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||||||||||| ||||| |
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| T |
9059333 |
tcattgggggaagaatag |
9059350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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