View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10778_low_6 (Length: 303)
Name: NF10778_low_6
Description: NF10778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10778_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 40683006 - 40683299
Alignment:
| Q |
16 |
aaaatggcatgagttttagacgaaaaaggaagaggctaataccatactctaacactattattgtgtgaatgaaccagactaggtattttagcgagattca |
115 |
Q |
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| T |
40683006 |
aaaatggcatgagttttagacgaaaaaggaagaggttaataccatactctaacactattattgtgtgaatgaaccagtctaggtattttagcgagattca |
40683105 |
T |
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| Q |
116 |
tgaaattactcaatgtaaaagtatgttggtaacattagtatacattcgtatacctgctctctctttt------------caaacacacaatcacccacat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
40683106 |
tgaaattactcaatgtaaaagtatgttggtaacattagtatacattcgtatacctgctctctcttttcaaacagacagacaaacacacaatcacacacat |
40683205 |
T |
|
| Q |
204 |
tcatggttacgtgttcttgaatattccctacctgatacaagtatttaagctgctaacttattcaccgattgatatatacagtatttcatctcac |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40683206 |
tcatggttacgtgttcttgaatattccctacctgatacaagtatttaagctgctaacttattcaccgattgatatatacagtatttcatgtcac |
40683299 |
T |
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