View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10778_low_7 (Length: 269)
Name: NF10778_low_7
Description: NF10778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10778_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 36361459 - 36361201
Alignment:
| Q |
1 |
caaacaggtgaagcatttgtgtcacatacaccaaatggaccacactctttgtaattatcacattggtcttttggtgcataccaaaattttgtccaaatat |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36361459 |
caaacaggtgaagcatttgtgtcacacacaccaaatggaccacactctttgtaattatcacattggtcttttggtgcataccaaaattttgtccaaatat |
36361360 |
T |
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| Q |
101 |
ttctactatttatccatgttagcctttgaagttcacctaatgaattcacacttagtcttgaaaacaatgattctttcccaatagaaaacgaatagtaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36361359 |
ttctactatttatccatgttagcctttgaagttcacctaatgaattcacacttagtcttgaaaacaatgattctttcccaatagaaaacgaatagtaaac |
36361260 |
T |
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| Q |
201 |
ttcatgttcattctcaacaaaactgaactgaattgaatctgtaactggttgcatctctg |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36361259 |
ttcatgttcattctcaacaaaactgaactgaattgaatctgtaactggttgcatctctg |
36361201 |
T |
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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 2685614 - 2685708
Alignment:
| Q |
1 |
caaacaggtgaagcatttgtgtcacatacaccaaatggaccacactctttgtaattatcacattggtcttttggtgcataccaaaattttgtcca |
95 |
Q |
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|||||||||||| |||||||||| |||| |||| | |||||||| ||| ||||| |||||||||| |||||||||||||||||||| |||||||| |
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| T |
2685614 |
caaacaggtgaaccatttgtgtcgcataaaccataaggaccacattctctgtaactatcacattgatcttttggtgcataccaaaaatttgtcca |
2685708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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