View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10779_low_11 (Length: 244)
Name: NF10779_low_11
Description: NF10779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10779_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 55396398 - 55396186
Alignment:
| Q |
19 |
ggaaggaccttgtgaccacgggaagcataaaaactaagaaatctttcccgtatggaatctccactcacacaattactatcattgtcttgcgagttcggtg |
118 |
Q |
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| T |
55396398 |
ggaaggaccttgtgaccacgggaagcataaaaactaagaaatctttcccgtatggaatctccactcacacaattactatcattgtcttgcgagttcggtg |
55396299 |
T |
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| Q |
119 |
atgacaacgacgatgatgtacagaaggaaagaagaagacgacgacgtagatgtagttgtttgaaagagataaatcctcctcctgctgctgctgctaatgt |
218 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
55396298 |
atgacaacgacgatgatgtacagaagggaagaagaagacgacgacgtagatgtagttgtttgaaagagataaatcctcctgctgctgctgctgctaatgt |
55396199 |
T |
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| Q |
219 |
aacattcatattc |
231 |
Q |
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| T |
55396198 |
aacattcatattc |
55396186 |
T |
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