View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10779_low_15 (Length: 231)
Name: NF10779_low_15
Description: NF10779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10779_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 45394246 - 45394444
Alignment:
| Q |
17 |
gaatgagggaatgtctgaagttgttgagagaggttttgattcatttacaatttaaaaatccttcatgcttcattattctcattgaaattatgaagataaa |
116 |
Q |
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| T |
45394246 |
gaatgagggaatgtctgaagttgttgagagaggttttgatttatttacgatttaaaaatccttcatgctttattattctcattgaaattatgaagataaa |
45394345 |
T |
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| Q |
117 |
agtttattttttaaattatcaaatcattatgcattgaatttgaatgaaatcaaggtggattgtgaatcaattttgttgagaggggtgtttacttacaac |
215 |
Q |
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| T |
45394346 |
agtttattttttaaattatcaaatcattatgcattgaatttgaatgaaatcaatgtggattgtgaatcaattttgttgagaggggtgtttacttacaac |
45394444 |
T |
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Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 32 - 215
Target Start/End: Original strand, 40367161 - 40367344
Alignment:
| Q |
32 |
tgaagttgttgagagaggttttgattcatttacaatttaaaaatccttcatgcttcattattctcattgaaattatgaagataaaagtttattttttaaa |
131 |
Q |
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| T |
40367161 |
tgaagttgttgagagaggttttgattcatttacgatttaaaaatccttcatgcttcattattctcattgaaattatgaagataaaagtttattttttaaa |
40367260 |
T |
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| Q |
132 |
ttatcaaatcattatgcattgaatttgaatgaaatcaaggtggattgtgaatcaattttgttgagaggggtgtttacttacaac |
215 |
Q |
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| T |
40367261 |
ttatcaaatcattatgcattgaatttgaatgaaatcaaggtggattgtgaatcaattttgttgagaggggtgtttacttacaac |
40367344 |
T |
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Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 50 - 215
Target Start/End: Complemental strand, 40584295 - 40584126
Alignment:
| Q |
50 |
ttttgattcatttacaatttaaa--aatccttcatgcttcattattctcattgaaattatgaagat-aaaagtttattttttaaattatcaaatcatt-a |
145 |
Q |
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||||||||||||| | ||||||| |||| |||||||||||||||||| ||||||||||||||||| |||| ||||||||| |||||||||||||||| | |
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| T |
40584295 |
ttttgattcattttcgatttaaagtaatctttcatgcttcattattcttattgaaattatgaagatgaaaaatttatttttaaaattatcaaatcattta |
40584196 |
T |
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| Q |
146 |
tgcattgaatttgaatgaaatcaaggtggattgtgaatcaattttgttgagaggggtgtttacttacaac |
215 |
Q |
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| T |
40584195 |
tgcaatgaatttgaatgaaatcatggtgggtcatgaatcaattttgttgagacgagtggttacttacaac |
40584126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 201
Target Start/End: Complemental strand, 20606808 - 20606674
Alignment:
| Q |
67 |
tttaaaaatccttcatgcttcattattctcattgaaattatgaagataaaagtttattttttaaattatcaaatca-ttatgcattgaatttgaatgaaa |
165 |
Q |
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| T |
20606808 |
tttaaaaatcattcatgtttcattattctcattgaaattatgaagatgaagggtttatttttaaattaacaaattatttatgcattgaatttgaatataa |
20606709 |
T |
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| Q |
166 |
tcaaggtggattgtgaatcaattttgttgagagggg |
201 |
Q |
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| T |
20606708 |
tcaagg-gggtcatgaatcaattttgtagagagggg |
20606674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 56 - 201
Target Start/End: Original strand, 43659889 - 43660035
Alignment:
| Q |
56 |
ttcatttacaatttaaaaatccttcatgcttcattattctcattgaaattatgaagataaaagtttattttttaaattatcaaatca--ttatgcattga |
153 |
Q |
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||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| || | || ||||||||||||||||| | ||||||||||| |
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| T |
43659889 |
ttcattttcgatttaaaaatcattcatgtttcattattctcattgaaattatgaagatgaagggtttatttttaaattatcaaattattttatgcattga |
43659988 |
T |
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| Q |
154 |
atttgaatgaaatcaaggtggattgtgaatcaattttgttgagagggg |
201 |
Q |
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| T |
43659989 |
atttgaatataatcaagg-gagtcatgaatcaattttgtagagagggg |
43660035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 201
Target Start/End: Complemental strand, 30581153 - 30581019
Alignment:
| Q |
67 |
tttaaaaatccttcatgcttcattattctcattgaaattatgaagataaaagtttattttttaaattatcaaatca-ttatgcattgaatttgaatgaaa |
165 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||| || | || ||||||||||| ||||| | ||||||||||||||||||| || |
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| T |
30581153 |
tttaaaaatcattcatgtttcattattctcattgaaattatgaagatgaagggtttatttttaaattaacaaattatttatgcattgaatttgaatataa |
30581054 |
T |
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| Q |
166 |
tcaaggtggattgtgaatcaattttgttgagagggg |
201 |
Q |
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| T |
30581053 |
tcaagg-gggtcatgaatcaattttgtagagagggg |
30581019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 38883678 - 38883768
Alignment:
| Q |
49 |
gttttgattcatttacaatttaaaaatccttcatgcttcattattctcattgaaattatgaagataaaagtttattttttaaattatcaaatc |
141 |
Q |
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| T |
38883678 |
gttttcattccttttcaatttaaaatccgttcatgtttcattattctcgttgaaattataaaaataaaag-ttattttttaaa-tatcaaatc |
38883768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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