View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10779_low_19 (Length: 214)

Name: NF10779_low_19
Description: NF10779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10779_low_19
NF10779_low_19
[»] chr7 (33 HSPs)
chr7 (1-199)||(21157383-21157581)
chr7 (89-196)||(22687038-22687152)
chr7 (93-196)||(17811592-17811702)
chr7 (88-145)||(5058830-5058887)
chr7 (139-196)||(26565376-26565433)
chr7 (140-195)||(8329873-8329928)
chr7 (141-196)||(39182400-39182455)
chr7 (141-195)||(8329809-8329863)
chr7 (139-196)||(17741888-17741945)
chr7 (140-195)||(8346360-8346415)
chr7 (139-196)||(4574974-4575031)
chr7 (145-194)||(14055503-14055552)
chr7 (145-194)||(14365531-14365580)
chr7 (143-195)||(8304331-8304383)
chr7 (141-195)||(8343632-8343686)
chr7 (146-196)||(20570720-20570770)
chr7 (93-174)||(26281165-26281251)
chr7 (143-196)||(5715529-5715582)
chr7 (154-187)||(6917031-6917064)
chr7 (139-196)||(21846275-21846332)
chr7 (143-196)||(25842563-25842616)
chr7 (159-196)||(27509260-27509297)
chr7 (139-196)||(30294490-30294546)
chr7 (139-188)||(48621483-48621532)
chr7 (93-141)||(44944620-44944668)
chr7 (141-180)||(1977808-1977847)
chr7 (141-191)||(7730189-7730239)
chr7 (146-196)||(11326527-11326577)
chr7 (146-196)||(24725307-24725357)
chr7 (158-195)||(8346313-8346350)
chr7 (147-196)||(23618265-23618314)
chr7 (143-196)||(27221658-27221711)
chr7 (140-176)||(21846341-21846377)
[»] scaffold0048 (2 HSPs)
scaffold0048 (89-196)||(48441-48547)
scaffold0048 (90-196)||(61086-61199)
[»] chr8 (25 HSPs)
chr8 (86-196)||(17647241-17647358)
chr8 (95-196)||(5922292-5922400)
chr8 (93-194)||(17566344-17566452)
chr8 (93-176)||(11879864-11879954)
chr8 (93-176)||(11897280-11897370)
chr8 (141-195)||(29384142-29384196)
chr8 (143-196)||(7262006-7262059)
chr8 (93-196)||(7489058-7489168)
chr8 (93-196)||(24414062-24414172)
chr8 (97-196)||(45403273-45403379)
chr8 (141-196)||(15761188-15761243)
chr8 (86-196)||(19704225-19704342)
chr8 (141-196)||(22910033-22910088)
chr8 (141-195)||(6811064-6811118)
chr8 (146-196)||(15294913-15294963)
chr8 (146-196)||(15475282-15475332)
chr8 (143-193)||(27836131-27836181)
chr8 (143-196)||(2040363-2040416)
chr8 (155-196)||(24056414-24056455)
chr8 (142-195)||(26574948-26575001)
chr8 (141-196)||(15231865-15231920)
chr8 (159-192)||(3094092-3094125)
chr8 (143-196)||(32424578-32424631)
chr8 (143-196)||(40541652-40541705)
chr8 (143-195)||(16752268-16752320)
[»] chr5 (20 HSPs)
chr5 (93-191)||(26021568-26021665)
chr5 (93-199)||(20321184-20321297)
chr5 (124-190)||(17624851-17624917)
chr5 (93-196)||(43005634-43005744)
chr5 (139-196)||(24648253-24648310)
chr5 (94-196)||(18843959-18844068)
chr5 (93-196)||(13341472-13341582)
chr5 (92-196)||(41688440-41688551)
chr5 (143-195)||(15051929-15051981)
chr5 (148-199)||(38158101-38158152)
chr5 (146-196)||(43235112-43235162)
chr5 (93-196)||(19579187-19579298)
chr5 (143-196)||(41427663-41427716)
chr5 (93-145)||(6852341-6852393)
chr5 (139-195)||(27340015-27340071)
chr5 (141-196)||(19377847-19377902)
chr5 (96-145)||(29270325-29270374)
chr5 (155-196)||(30799641-30799682)
chr5 (93-145)||(18051308-18051360)
chr5 (93-145)||(19979870-19979922)
[»] chr4 (26 HSPs)
chr4 (93-196)||(24719819-24719922)
chr4 (110-174)||(5884054-5884118)
chr4 (139-195)||(6346783-6346839)
chr4 (141-196)||(37240483-37240538)
chr4 (139-196)||(5943087-5943144)
chr4 (139-196)||(10394854-10394911)
chr4 (93-196)||(9770356-9770466)
chr4 (94-196)||(23064737-23064846)
chr4 (139-196)||(7452750-7452806)
chr4 (139-196)||(9149550-9149607)
chr4 (141-196)||(10143144-10143199)
chr4 (143-196)||(8010968-8011021)
chr4 (143-196)||(55476232-55476285)
chr4 (143-199)||(5375906-5375962)
chr4 (93-188)||(7045196-7045298)
chr4 (145-196)||(4157271-4157322)
chr4 (145-196)||(4157558-4157609)
chr4 (141-196)||(5361795-5361850)
chr4 (93-152)||(27528130-27528189)
chr4 (145-195)||(8889462-8889512)
chr4 (146-189)||(7045014-7045057)
chr4 (141-196)||(17466323-17466378)
chr4 (110-189)||(21314869-21314947)
chr4 (141-195)||(18459461-18459515)
chr4 (154-192)||(20812791-20812829)
chr4 (160-196)||(5884129-5884165)
[»] chr1 (23 HSPs)
chr1 (93-196)||(18304593-18304696)
chr1 (143-196)||(17055751-17055804)
chr1 (93-196)||(14074258-14074368)
chr1 (94-196)||(21846050-21846159)
chr1 (95-196)||(16125232-16125340)
chr1 (141-195)||(47786103-47786157)
chr1 (129-196)||(21242845-21242912)
chr1 (93-193)||(12513518-12513625)
chr1 (143-196)||(23528900-23528953)
chr1 (93-196)||(13100434-13100544)
chr1 (139-195)||(16434754-16434810)
chr1 (113-196)||(19009743-19009833)
chr1 (93-180)||(25146543-25146637)
chr1 (88-196)||(30619186-30619299)
chr1 (93-145)||(9954771-9954823)
chr1 (97-196)||(17869529-17869635)
chr1 (93-196)||(41032548-41032658)
chr1 (93-199)||(9351838-9351951)
chr1 (102-196)||(17197313-17197414)
chr1 (141-196)||(32881564-32881619)
chr1 (95-144)||(27917176-27917225)
chr1 (143-195)||(8773513-8773565)
chr1 (139-191)||(39845083-39845135)
[»] chr3 (25 HSPs)
chr3 (92-196)||(10872489-10872600)
chr3 (141-196)||(17064551-17064606)
chr3 (93-193)||(41671426-41671533)
chr3 (93-196)||(24619972-24620082)
chr3 (96-196)||(27676680-27676787)
chr3 (92-172)||(6860985-6861065)
chr3 (93-196)||(8592174-8592284)
chr3 (141-191)||(28136011-28136061)
chr3 (102-194)||(3041469-3041568)
chr3 (139-196)||(6136397-6136454)
chr3 (143-196)||(13286188-13286241)
chr3 (139-196)||(17796809-17796866)
chr3 (139-196)||(19105249-19105306)
chr3 (143-195)||(22971054-22971106)
chr3 (93-196)||(28746020-28746130)
chr3 (141-196)||(3449140-3449195)
chr3 (93-195)||(29067522-29067630)
chr3 (145-196)||(42697092-42697143)
chr3 (143-196)||(20756266-20756319)
chr3 (93-180)||(8560232-8560326)
chr3 (145-196)||(22137521-22137572)
chr3 (141-196)||(25870152-25870207)
chr3 (93-143)||(24649524-24649574)
chr3 (139-176)||(13006089-13006126)
chr3 (143-180)||(18014251-18014288)
[»] scaffold0016 (1 HSPs)
scaffold0016 (93-196)||(56200-56310)
[»] chr6 (26 HSPs)
chr6 (93-196)||(7223759-7223869)
chr6 (93-196)||(22498215-22498325)
chr6 (93-196)||(4841611-4841714)
chr6 (92-195)||(3573673-3573784)
chr6 (88-196)||(30912176-30912291)
chr6 (93-196)||(17543505-17543615)
chr6 (93-196)||(19748577-19748687)
chr6 (141-195)||(2912091-2912145)
chr6 (139-196)||(20432421-20432478)
chr6 (93-196)||(11327337-11327447)
chr6 (86-196)||(17103439-17103556)
chr6 (139-196)||(1179068-1179126)
chr6 (93-195)||(7621749-7621859)
chr6 (96-196)||(26053074-26053181)
chr6 (96-196)||(26073127-26073234)
chr6 (143-196)||(27890630-27890683)
chr6 (93-196)||(7918125-7918235)
chr6 (93-180)||(27233074-27233168)
chr6 (147-196)||(15527946-15527995)
chr6 (139-195)||(4596681-4596737)
chr6 (139-195)||(20399902-20399958)
chr6 (100-196)||(20981363-20981458)
chr6 (141-196)||(23898055-23898109)
chr6 (97-195)||(33592930-33593034)
chr6 (100-145)||(4594748-4594793)
chr6 (143-180)||(27614488-27614525)
[»] chr2 (20 HSPs)
chr2 (90-196)||(25538917-25539030)
chr2 (92-196)||(1405027-1405138)
chr2 (139-196)||(16767029-16767086)
chr2 (93-196)||(19245833-19245943)
chr2 (102-196)||(20034006-20034107)
chr2 (93-196)||(8428466-8428576)
chr2 (139-199)||(13502501-13502561)
chr2 (93-196)||(20063967-20064077)
chr2 (103-196)||(27523881-27523981)
chr2 (143-196)||(974582-974635)
chr2 (97-196)||(31237755-31237861)
chr2 (146-196)||(34578133-34578183)
chr2 (143-196)||(7302026-7302079)
chr2 (143-196)||(19262148-19262201)
chr2 (155-198)||(15627986-15628029)
chr2 (139-177)||(16767185-16767223)
chr2 (139-189)||(27407042-27407092)
chr2 (143-196)||(36430092-36430145)
chr2 (140-196)||(27749338-27749394)
chr2 (154-190)||(31062311-31062347)
[»] scaffold0534 (1 HSPs)
scaffold0534 (93-194)||(916-1024)
[»] scaffold0186 (1 HSPs)
scaffold0186 (93-196)||(8685-8795)
[»] scaffold0603 (1 HSPs)
scaffold0603 (139-195)||(8787-8843)
[»] scaffold0028 (1 HSPs)
scaffold0028 (139-196)||(145832-145889)
[»] scaffold0042 (1 HSPs)
scaffold0042 (140-196)||(93534-93590)
[»] scaffold0150 (1 HSPs)
scaffold0150 (139-196)||(33182-33239)
[»] scaffold0079 (1 HSPs)
scaffold0079 (143-196)||(14758-14811)
[»] scaffold0027 (1 HSPs)
scaffold0027 (143-196)||(132947-133000)
[»] scaffold0510 (1 HSPs)
scaffold0510 (141-196)||(34-88)
[»] scaffold0001 (1 HSPs)
scaffold0001 (140-195)||(142874-142929)
[»] scaffold0417 (1 HSPs)
scaffold0417 (145-195)||(7289-7339)
[»] scaffold2084 (1 HSPs)
scaffold2084 (93-145)||(130-182)
[»] scaffold0017 (1 HSPs)
scaffold0017 (93-145)||(38302-38354)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 21157383 - 21157581
Alignment:
Q  1 aattgaagcacttgaaacaaaatccgcatttaagtgaagaatatgtagataatatgatgagccatgctttacatgatgataatagtccaacaaaggttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  21157383 aattgaagcacttgaaacaaaatccgcatttaagtgaagaatatgtagataatatgatgagccatgctttacacgatgataatagtctaacaaaggttgt 21157482  T
Q  101 taaaatcgggattttacttcagatcaaaagggaatagcaaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatctat 199  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21157483 taaaattggaattttacttcagatcaaaagggaatagcaaaatcgtaaaatctcaatcaaaattgaaggattttattcaactacttttgtagaatctat 21157581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 89 - 196
Target Start/End: Original strand, 22687038 - 22687152
Alignment:
Q  89 aacaaaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatc-------gtaaaatctcaatcaaaattgaaggattttactcaac 181  Q
    ||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||       |||||||| ||| ||||||||||| ||||||||||||    
T  22687038 aacaaaggttgttaaaatcgggattttgcttcagatcgaaagagaagagcaaaatcgagaatcgtaaaatcacaaccaaaattgaagaattttactcaac 22687137  T
Q  182 tacttttgtagaatc 196  Q
    |||||||||||||||    
T  22687138 tacttttgtagaatc 22687152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 17811702 - 17811592
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaa-------tcgtaaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| |||||||||| |||||||||| |||||||||||||||||||       |||||||||| |||||||||| ||| ||||||||||||  |||    
T  17811702 aaggttgtcaaaatcgggactttacttcaggtcaaaagggaatagcaaaatcgggattcgtaaaatcgcaatcaaaatcgaaagattttactcaaggact 17811603  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  17811602 tttgtagaatc 17811592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 5058887 - 5058830
Alignment:
Q  88 caacaaaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg 145  Q
    |||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  5058887 caactaaggttgtcaaaatcgggactttacttcagatcaaaagggaatagcaaaatcg 5058830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 26565376 - 26565433
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||    
T  26565376 aaaatcgtaaaatcgtaatcaaaatcgaaggattttactcaactacttttgtagaatc 26565433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 8329873 - 8329928
Alignment:
Q  140 aaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||    
T  8329873 aaatcgtaaaatcgcaatcaaaatcaaaggattttactcaactacttttgtagaat 8329928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 39182455 - 39182400
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||    
T  39182455 aatcgtaaaatcgcaaccaaaatcgaaggattttactcaactacttttgtagaatc 39182400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 8329809 - 8329863
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    |||| ||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  8329809 aatcataaaattgcaatcaaaattgaaggattttactcaactacttttgtagaat 8329863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 17741945 - 17741888
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||||  |||||||||||||||||||||||| |||||||||| |||||||    
T  17741945 aaaatcgtaaaattgcaatcaaaattgaaggattttacttaactacttttttagaatc 17741888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 8346360 - 8346415
Alignment:
Q  140 aaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    ||||||||| ||| ||||||||||  ||||||||||||||||||||||||||||||    
T  8346360 aaatcgtaatatcgcaatcaaaatcaaaggattttactcaactacttttgtagaat 8346415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 4575031 - 4574974
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||||| ||||||||||  ||| ||| |||||||||||||||||||||||    
T  4575031 aaaatcgtaaaatcgcaatcaaaatcaaagaattctactcaactacttttgtagaatc 4574974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 14055552 - 14055503
Alignment:
Q  145 gtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaa 194  Q
    |||||||| ||| |||||| ||||||||||||||||||||||||||||||    
T  14055552 gtaaaatcgcaaccaaaatcgaaggattttactcaactacttttgtagaa 14055503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 14365580 - 14365531
Alignment:
Q  145 gtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaa 194  Q
    |||||||| ||| |||||| ||||||||||||||||||||||||||||||    
T  14365580 gtaaaatcgcaaccaaaatcgaaggattttactcaactacttttgtagaa 14365531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 8304383 - 8304331
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    |||||||||| |||||||||| ||||||||||||||||  |||||||||||||    
T  8304383 tcgtaaaatcacaatcaaaatcgaaggattttactcaaggacttttgtagaat 8304331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 8343632 - 8343686
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    ||||||||||   |||||||||| |||| ||||||||||||||||||||||||||    
T  8343632 aatcgtaaaaatgcaatcaaaatcgaagtattttactcaactacttttgtagaat 8343686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 20570720 - 20570770
Alignment:
Q  146 taaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    ||||||| |||||||||||||| ||||||||||||  ||||||||||||||    
T  20570720 taaaatcgcaatcaaaattgaaagattttactcaaggacttttgtagaatc 20570770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 26281165 - 26281251
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaa-----atcgtaaaatctcaatcaaaattgaaggatttt 174  Q
    |||||||| |||||| ||| ||||||| || || ||| |||||||||||     ||||||||||| |||||||||||||||||||||    
T  26281165 aaggttgtcaaaatcaggactttactttaggtcgaaaaggaatagcaaatcaggatcgtaaaatcgcaatcaaaattgaaggatttt 26281251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 5715582 - 5715529
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||| |||||||||| || |||||||||||||  ||||||||||||||    
T  5715582 tcgtaaaatcgcaatcaaaatcgagggattttactcaaggacttttgtagaatc 5715529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 6917064 - 6917031
Alignment:
Q  154 caatcaaaattgaaggattttactcaactacttt 187  Q
    ||||||||||||||||||||||||||||||||||    
T  6917064 caatcaaaattgaaggattttactcaactacttt 6917031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 21846275 - 21846332
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||| ||||||| ||| |||||| ||||||||||| |||||||||||| |||||||    
T  21846275 aaaatcctaaaatcgcaaccaaaatcgaaggattttaatcaactacttttatagaatc 21846332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 25842563 - 25842616
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||| |||||||||||| |||||||||||||   ||||||||||||||    
T  25842563 tcgtaaaatcgcaatcaaaattggaggattttactcatgaacttttgtagaatc 25842616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 27509260 - 27509297
Alignment:
Q  159 aaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||||||||||||||||||||| |||||||    
T  27509260 aaaattgaaggattttactcaactacttttatagaatc 27509297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 30294546 - 30294490
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    ||||||||||| || |||||||||| ||||||||||||| |||||||||| |||||||    
T  30294546 aaaatcgtaaa-tcacaatcaaaatcgaaggattttacttaactacttttatagaatc 30294490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 48621483 - 48621532
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactactttt 188  Q
    |||||||||||||| ||||  |||||||| ||||||||||||||||||||    
T  48621483 aaaatcgtaaaatcgcaattgaaattgaaagattttactcaactactttt 48621532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 44944620 - 44944668
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaa 141  Q
    |||||||| |||||||||| ||||||||||||| ||||| |||||||||    
T  44944620 aaggttgtcaaaatcgggactttacttcagatcgaaaggaaatagcaaa 44944668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 1977847 - 1977808
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaa 180  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  1977847 aatcgtaaaatcgcaatcaaaatcgaaggattttactcaa 1977808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 7730189 - 7730239
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgta 191  Q
    |||||||||||| ||| |||||| ||| | |||||||||||||||||||||    
T  7730189 aatcgtaaaatcgcaaccaaaatcgaatggttttactcaactacttttgta 7730239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 11326577 - 11326527
Alignment:
Q  146 taaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    ||||||| ||||||||||||||| |||||||||||  |||||||| |||||    
T  11326577 taaaatcacaatcaaaattgaagtattttactcaaggacttttgtggaatc 11326527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 24725307 - 24725357
Alignment:
Q  146 taaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    ||||||| ||||||||||  |||||||||||||||  ||||||||||||||    
T  24725307 taaaatcgcaatcaaaatcaaaggattttactcaaggacttttgtagaatc 24725357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 8346313 - 8346350
Alignment:
Q  158 caaaattgaaggattttactcaactacttttgtagaat 195  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  8346313 caaaatcgaaggattttactcaactacttttatagaat 8346350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 23618265 - 23618314
Alignment:
Q  147 aaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||| |||||||||| |||| |||||||||||  ||||||||||||||    
T  23618265 aaaatcgcaatcaaaatcgaagaattttactcaaggacttttgtagaatc 23618314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 27221711 - 27221658
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||| |||||||||| ||||||||||||||    ||||||||||||||    
T  27221711 tcgtaaaatcgcaatcaaaatcgaaggattttactcggagacttttgtagaatc 27221658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 21846341 - 21846377
Alignment:
Q  140 aaatcgtaaaatctcaatcaaaattgaaggattttac 176  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  21846341 aaatcgtaaaatcacaatcaaaattgatggattttac 21846377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 196
Target Start/End: Original strand, 48441 - 48547
Alignment:
Q  89 aacaaaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcgtaaaatctcaatcaaaattgaaggattttactcaactactttt 188  Q
    |||||||||||| |||||||||||||| |||||| || ||||| || || ||| |  |||||||||||||||||| ||||||||||||| ||||||||||    
T  48441 aacaaaggttgtcaaaatcgggattttgcttcagttctaaaggaaaaagtaaa-tattaaaatctcaatcaaaatcgaaggattttacttaactactttt 48539  T
Q  189 gtagaatc 196  Q
    ||||||||    
T  48540 gtagaatc 48547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 61086 - 61199
Alignment:
Q  90 acaaaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaa-------tcgtaaaatctcaatcaaaattgaaggattttactcaact 182  Q
    ||||||||||  |||||||||||||| |||||| ||||||| ||| || ||||       |||||||||| |||||||||| |||| |||||||| ||||    
T  61086 acaaaggttgccaaaatcgggattttgcttcaggtcaaaagagaaaagtaaaatttaaaatcgtaaaatcacaatcaaaatcgaagaattttacttaact 61185  T
Q  183 acttttgtagaatc 196  Q
    ||||||||||||||    
T  61186 acttttgtagaatc 61199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 86 - 196
Target Start/End: Complemental strand, 17647358 - 17647241
Alignment:
Q  86 tccaacaaaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactc 178  Q
    |||||||||||||||||||||||||||||| |||||| || |||| ||  ||||||||||       ||||||| |||||||||| ||||||||||||||    
T  17647358 tccaacaaaggttgttaaaatcgggattttgcttcaggtcgaaagagatgagcaaaatcgacaatcataaaatcgcaatcaaaatcgaaggattttactc 17647259  T
Q  179 aactacttttgtagaatc 196  Q
    ||||| ||||||||||||    
T  17647258 aactagttttgtagaatc 17647241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 95 - 196
Target Start/End: Complemental strand, 5922400 - 5922292
Alignment:
Q  95 ggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatc-------gtaaaatctcaatcaaaattgaaggattttactcaactacttt 187  Q
    |||||| |||||||||| |||||||||| || ||||||||||||||||||       ||| |||| |||||||||| ||||||||||||||||  |||||    
T  5922400 ggttgtcaaaatcgggactttacttcaggtcgaaagggaatagcaaaatcagaacatgtacaatcgcaatcaaaatcgaaggattttactcaagaacttt 5922301  T
Q  188 tgtagaatc 196  Q
    |||||||||    
T  5922300 tgtagaatc 5922292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 17566452 - 17566344
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaat-------cgtaaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||| |||||||| ||||||| |||||| ||||||||||| ||||||||       ||||||||  |||||||||| |||| ||||||||||||||||    
T  17566452 aaggtttttaaaatcaggattttgcttcaggtcaaaagggaagagcaaaattgaaaatcgtaaaattgcaatcaaaatcgaagaattttactcaactact 17566353  T
Q  186 tttgtagaa 194  Q
    |||||||||    
T  17566352 tttgtagaa 17566344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 11879954 - 11879864
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaa-------tcgtaaaatctcaatcaaaattgaaggattttac 176  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| ||||       |||||||||| |||||||||| ||||||||||||    
T  11879954 aaggttgtcaaaatcgggattttacttcaggtcaaaagggaatagtaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggattttac 11879864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 11897370 - 11897280
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaa-------tcgtaaaatctcaatcaaaattgaaggattttac 176  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| ||||       |||||||||| |||||||||| ||||||||||||    
T  11897370 aaggttgtcaaaatcgggattttacttcaggtcaaaagggaatagtaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggattttac 11897280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 29384142 - 29384196
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    |||||||||||| ||| |||||| |||||||||||||||||||||||||||||||    
T  29384142 aatcgtaaaatcgcaaccaaaatcgaaggattttactcaactacttttgtagaat 29384196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 7262059 - 7262006
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||| ||||||||||| |||||||||||||||  ||||||||||||||    
T  7262059 tcgtaaaatcgcaatcaaaattaaaggattttactcaaggacttttgtagaatc 7262006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 7489058 - 7489168
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaat-------cgtaaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| |||||| ||| |||||||||  || ||||| |||||||||||       ||||||||| |||||||||| | ||||||||||||||  |||    
T  7489058 aaggttgtcaaaatcaggactttacttcaagtcgaaaggaaatagcaaaattaggactcgtaaaatcgcaatcaaaatcggaggattttactcaaggact 7489157  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  7489158 tttgtagaatc 7489168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 24414062 - 24414172
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaat-------cgtaaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| ||||| || | |||||||||  || |||||||||||||||||       ||||||||| |||||||||| ||||||||||||||||  | |    
T  24414062 aaggttgtcaaaattggaactttacttcatgtcgaaagggaatagcaaaatttagactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaatt 24414161  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  24414162 tttgtagaatc 24414172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 196
Target Start/End: Complemental strand, 45403379 - 45403273
Alignment:
Q  97 ttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactacttttg 189  Q
    |||| |||||||||| |||| ||||  || |||||||||||||||||||       ||||||| |||||||||| ||||||||||||| ||  |||||||    
T  45403379 ttgtcaaaatcgggactttatttcacgtcgaaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaaggattttacttaaagacttttg 45403280  T
Q  190 tagaatc 196  Q
    |||||||    
T  45403279 tagaatc 45403273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 15761188 - 15761243
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||| ||||  |||| |||||||||||||||| |||||||||||||||    
T  15761188 aatcgtaaaatcgcaatataaatcgaaggattttactcaattacttttgtagaatc 15761243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 196
Target Start/End: Original strand, 19704225 - 19704342
Alignment:
Q  86 tccaacaaaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaa-------tcgtaaaatctcaatcaaaattgaaggattttactc 178  Q
    |||||||| | |||||| ||| ||||||||||||||  || ||||||||||||||||       |||||||||| ||||||||||  ||||| |||||||    
T  19704225 tccaacaaggtttgttagaattgggattttacttcaagtccaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcaaaggaatttactc 19704324  T
Q  179 aactacttttgtagaatc 196  Q
    ||  ||| ||||||||||    
T  19704325 aaggactgttgtagaatc 19704342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 22910033 - 22910088
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||| ||| | |||||||||||||||| ||||||| ||||||||||||    
T  22910033 aatcgtaaaatcgcaaccgaaattgaaggattttattcaactatttttgtagaatc 22910088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 6811118 - 6811064
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    |||||||||||| ||| |||||| |||| |||||| |||||||||||||||||||    
T  6811118 aatcgtaaaatcgcaaccaaaatcgaagaattttaatcaactacttttgtagaat 6811064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 15294963 - 15294913
Alignment:
Q  146 taaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    ||||||| |||||||||| ||||||||||||||||  ||||||||||||||    
T  15294963 taaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatc 15294913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 15475332 - 15475282
Alignment:
Q  146 taaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    ||||||| |||||||||| ||||||||||||||||  ||||||||||||||    
T  15475332 taaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatc 15475282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 27836131 - 27836181
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtaga 193  Q
    |||||||||| |||||||||| ||||||||||||||||  |||||||||||    
T  27836131 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtaga 27836181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 2040416 - 2040363
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||| |||||||||| |||||||||||||||   ||||||||||||||    
T  2040416 tcgtaaaatcgcaatcaaaatcgaaggattttactcatggacttttgtagaatc 2040363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 24056414 - 24056455
Alignment:
Q  155 aatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  24056414 aatcaaaatcgaaggattttactcaactagttttgtagaatc 24056455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 26574948 - 26575001
Alignment:
Q  142 atcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    ||||||||||| |||||||||||||||||||||||  ||||| || ||||||||    
T  26574948 atcgtaaaatcgcaatcaaaattgaaggattttacctaactatttatgtagaat 26575001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 15231920 - 15231865
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||| |||  ||||| | | ||||||||||||||||||||||||||||    
T  15231920 aatcgtaaaatcgcaactaaaatcgtacgattttactcaactacttttgtagaatc 15231865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 3094092 - 3094125
Alignment:
Q  159 aaaattgaaggattttactcaactacttttgtag 192  Q
    |||||||||||||||||||||| |||||||||||    
T  3094092 aaaattgaaggattttactcaattacttttgtag 3094125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 32424631 - 32424578
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||| |||| ||||| ||||||||||||||||  | ||||||||||||    
T  32424631 tcgtaaaatcgcaattaaaatcgaaggattttactcaaggagttttgtagaatc 32424578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 40541652 - 40541705
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||| |||||||||||||| ||||||| ||||  |||| |||||||||    
T  40541652 tcgtaaaatcgcaatcaaaattgaaagattttattcaaggacttctgtagaatc 40541705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 16752320 - 16752268
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    |||||||||| ||| |||||| ||||||||||||||||  | |||||||||||    
T  16752320 tcgtaaaatcgcaaacaaaatcgaaggattttactcaaggaattttgtagaat 16752268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 26021665 - 26021568
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgta 191  Q
    |||||||| |||||||||||||| ||||||  |||||||||| |||||||||| |||||| |||||||||| | |||||||||||||||||||| ||||    
T  26021665 aaggttgtcaaaatcgggattttgcttcaggccaaaagggaagagcaaaatcg-aaaatcacaatcaaaatcgtaggattttactcaactacttgtgta 26021568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 199
Target Start/End: Complemental strand, 20321297 - 20321184
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| ||||| |||| |||||||||| |||||| ||||||| |||||||       ||||||| |||||||||||||||||||||||| ||  |||    
T  20321297 aaggttgtcaaaattgggactttacttcaggtcaaaaaggaatagtaaaatcgggactcataaaatcgcaatcaaaattgaaggattttactgaaggact 20321198  T
Q  186 tttgtagaatctat 199  Q
    ||||||||||||||    
T  20321197 tttgtagaatctat 20321184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 17624917 - 17624851
Alignment:
Q  124 tcaaaagggaatagcaaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgt 190  Q
    ||||||| ||||||||||||||||||||| ||||||||||  || ||||||||||||||||||||||    
T  17624917 tcaaaagagaatagcaaaatcgtaaaatcgcaatcaaaatcaaaagattttactcaactacttttgt 17624851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 43005634 - 43005744
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| |||||||||||||| ||| ||||| ||||| ||||| ||| |||       ||||||| |||||||||||||| |||||||||||||| ||    
T  43005634 aaggttgtcaaaatcgggattttgctttagatcgaaaggaaatagaaaattcgaaaattgtaaaatcgcaatcaaaattgaaagattttactcaacttct 43005733  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  43005734 tttgtagaatc 43005744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 24648310 - 24648253
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    ||||||||||||||  |||||||||  |||||||||||||||||||||||||||||||    
T  24648310 aaaatcgtaaaatcgtaatcaaaatcaaaggattttactcaactacttttgtagaatc 24648253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 18844068 - 18843959
Alignment:
Q  94 aggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaa-------tcgtaaaatctcaatcaaaattgaaggattttactcaactactt 186  Q
    ||||||| |||||||| | |||||||||| || ||||||||||||||||       |||||||||| |||||||||| | || |||||||||||  ||||    
T  18844068 aggttgtcaaaatcggaactttacttcaggtcgaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcggagtattttactcaaggactt 18843969  T
Q  187 ttgtagaatc 196  Q
    ||||||||||    
T  18843968 ttgtagaatc 18843959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 13341472 - 13341582
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaa--------tcgtaaaatctcaatcaaaattgaaggattttactcaactac 184  Q
    |||||||| |||||||||||||| ||||| ||| ||||||||||| ||||        |||||||||| ||| | ||||||||||| ||||||| |||||    
T  13341472 aaggttgtcaaaatcgggattttgcttcaaatcgaaagggaatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaagga-tttactcgactac 13341570  T
Q  185 ttttgtagaatc 196  Q
    ||||||||||||    
T  13341571 ttttgtagaatc 13341582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 41688440 - 41688551
Alignment:
Q  92 aaaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactac 184  Q
    ||||||||| |||||||||| ||||||| ||  | |||||||||||||||||||       ||||||| ||| |||||| ||||||||||||| ||  ||    
T  41688440 aaaggttgtcaaaatcgggactttactttaggacgaaagggaatagcaaaatcgggactcctaaaatcgcaaccaaaatcgaaggattttacttaaggac 41688539  T
Q  185 ttttgtagaatc 196  Q
    ||||||||||||    
T  41688540 ttttgtagaatc 41688551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 15051929 - 15051981
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    |||||||||| |||||||||| ||||||||||||||||  |||||||||||||    
T  15051929 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaat 15051981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 38158101 - 38158152
Alignment:
Q  148 aaatctcaatcaaaattgaaggattttactcaactacttttgtagaatctat 199  Q
    ||||| ||| |||||| ||||||||||||||||||| |||||||||||||||    
T  38158101 aaatcgcaaccaaaatcgaaggattttactcaactatttttgtagaatctat 38158152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 43235162 - 43235112
Alignment:
Q  146 taaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    ||||||| |||||||||| ||||||||||||||||  ||||||||||||||    
T  43235162 taaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatc 43235112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 19579298 - 19579187
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaata-gcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactac 184  Q
    ||||| || ||||||||||||||||||||| || ||||||| || ||||||| |       ||||||| |||||||||| ||||||||| ||||||  ||    
T  19579298 aaggtagtcaaaatcgggattttacttcaggtcgaaagggagtaagcaaaattgggactcataaaatcgcaatcaaaatcgaaggatttcactcaaggac 19579199  T
Q  185 ttttgtagaatc 196  Q
    ||||||||||||    
T  19579198 ttttgtagaatc 19579187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 41427716 - 41427663
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||| |||||||||| |||||||||||||| |  ||||||||||||||    
T  41427716 tcgtaaaatcgcaatcaaaatcgaaggattttactcgaggacttttgtagaatc 41427663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 6852341 - 6852393
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg 145  Q
    |||||||| |||||||||| || ||||||| || |||||||||||||||||||    
T  6852341 aaggttgtcaaaatcgggacttcacttcaggtcgaaagggaatagcaaaatcg 6852393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 27340015 - 27340071
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    |||||||| ||||| |||||||||| |||||||||||||||   |||||||||||||    
T  27340015 aaaatcgtgaaatcgcaatcaaaatcgaaggattttactcacggacttttgtagaat 27340071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 19377902 - 19377847
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    ||||||||| |  |||||||||| ||||||||||||||||  ||||||||||||||    
T  19377902 aatcgtaaatttacaatcaaaatcgaaggattttactcaaggacttttgtagaatc 19377847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 29270374 - 29270325
Alignment:
Q  96 gttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg 145  Q
    ||||| ||||||||||||||| ||||| ||||||| ||||| ||||||||    
T  29270374 gttgtcaaaatcgggattttatttcaggtcaaaagagaatatcaaaatcg 29270325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 30799682 - 30799641
Alignment:
Q  155 aatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||| |||| |||||||||||| |||||||||||||||||||    
T  30799682 aatcgaaatcgaaggattttacacaactacttttgtagaatc 30799641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 18051308 - 18051360
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg 145  Q
    ||||| || |||||||||||||||||| || || ||||||||||| |||||||    
T  18051308 aaggtagtcaaaatcgggattttactttaggtcgaaagggaatagaaaaatcg 18051360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 19979922 - 19979870
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg 145  Q
    ||||| || |||||||||||||| |||||| ||||||| ||| ||||||||||    
T  19979922 aaggtggtcaaaatcgggattttgcttcaggtcaaaagagaagagcaaaatcg 19979870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 24719922 - 24719819
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtag 192  Q
    |||||||| ||||||| |||||| |||||| || |||||||| |||||||||| ||||||  ||||| ||| |||||||||||||| | |||||||||||    
T  24719922 aaggttgtcaaaatcgagattttgcttcaggtcgaaagggaagagcaaaatcgaaaaatcgaaatcacaatcgaaggattttactcgattacttttgtag 24719823  T
Q  193 aatc 196  Q
    ||||    
T  24719822 aatc 24719819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 5884054 - 5884118
Alignment:
Q  110 gattttacttcagatcaaaagggaatagcaaaatcgtaaaatctcaatcaaaattgaaggatttt 174  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  5884054 gattttgcttcagatcaaaagggaatagcaaaatcgtaaaatcgcaatcgaaatcgaaggatttt 5884118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 6346783 - 6346839
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  6346783 aaaatcgtaaaatcacaatcaaaatcgaaggattttactcaactacttttgtagaat 6346839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 37240538 - 37240483
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  37240538 aatcgtaaaatcgcaatcaaaatcgaaggattttactcaactacttttgtagaatc 37240483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 5943087 - 5943144
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||    
T  5943087 aaaatcgtaaaatcgcaagtaaaattgaaggattttactcaactacttttgtagaatc 5943144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 10394911 - 10394854
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||    
T  10394911 aaaatcgtaaaatcgcaatcaaaatcgaaggactttactcaactacttttgtagaatc 10394854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 9770466 - 9770356
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| |||||||||| ||||||| || || |||||||||||||||||||       ||||||| |||||||||| ||||||||||||||||   ||    
T  9770466 aaggttgtcaaaatcgggactttactttaggtcgaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggtct 9770367  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  9770366 tttgtagaatc 9770356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 196
Target Start/End: Original strand, 23064737 - 23064846
Alignment:
Q  94 aggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactactt 186  Q
    ||||||| |||||||||| |||||||||| || |||||||||| | ||||||       ||||||| |||||||||||||||||||||| ||||  ||||    
T  23064737 aggttgtcaaaatcgggactttacttcaggtcgaaagggaataacgaaatcggaactcgtaaaatcgcaatcaaaattgaaggattttattcaaggactt 23064836  T
Q  187 ttgtagaatc 196  Q
    ||||||||||    
T  23064837 ttgtagaatc 23064846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 7452806 - 7452750
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||    
T  7452806 aaaatcgtaaaatcgcaatcaaaatcgaagga-tttactcaactacttttgtagaatc 7452750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 9149550 - 9149607
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    ||||| |||||||  |||||||||||||||||||||||||||||||||| ||||||||    
T  9149550 aaaattgtaaaattccaatcaaaattgaaggattttactcaactactttcgtagaatc 9149607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 10143199 - 10143144
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||| |||||||||| ||||||||||| ||||||| ||||||||||||    
T  10143199 aatcgtaaaatcgcaatcaaaatcgaaggattttattcaactaattttgtagaatc 10143144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 8010968 - 8011021
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||| |||||||||| ||||||||||||||||||| |||| |||||||    
T  8010968 tcgtaaaatcgcaatcaaaatcgaaggattttactcaactatttttatagaatc 8011021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 55476285 - 55476232
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||| |||||||||| ||||||||||||||||  ||||||||||||||    
T  55476285 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatc 55476232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 5375962 - 5375906
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatctat 199  Q
    |||||||||| |||||||||| ||||||||||||||||  |||| ||||||||||||    
T  5375962 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttctgtagaatctat 5375906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 188
Target Start/End: Complemental strand, 7045298 - 7045196
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| ||||| || |||||||||||| || |||||||| |||||||||        ||||||| |||||||||| |||||||||||||||||| ||    
T  7045298 aaggttgtcaaaataggaattttacttcaggtcgaaagggaagagcaaaatcaaaaatcataaaatcgcaatcaaaatcgaaggattttactcaactgct 7045199  T
Q  186 ttt 188  Q
    |||    
T  7045198 ttt 7045196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 4157322 - 4157271
Alignment:
Q  145 gtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||| ||||||| || ||| ||||||||||||||||||||||||||||    
T  4157322 gtaaaatcgcaatcaagatcgaaagattttactcaactacttttgtagaatc 4157271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 4157609 - 4157558
Alignment:
Q  145 gtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||| ||||||| || ||| ||||||||||||||||||||||||||||    
T  4157609 gtaaaatcgcaatcaagatcgaaagattttactcaactacttttgtagaatc 4157558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 5361795 - 5361850
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||  ||| |||||| ||||| ||||||||||||||||||||||||||    
T  5361795 aatcgtaaaattgcaaacaaaatcgaagggttttactcaactacttttgtagaatc 5361850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 27528189 - 27528130
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcgtaaaatc 152  Q
    |||||||| ||||||| |||||||||||| ||| |||||||||| |||||||| ||||||    
T  27528189 aaggttgtcaaaatcgagattttacttcatatcgaaagggaataacaaaatcgaaaaatc 27528130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 8889512 - 8889462
Alignment:
Q  145 gtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    |||||||| ||| |||||| ||||||| |||||||||||||||||||||||    
T  8889512 gtaaaatcgcaaccaaaatcgaaggatcttactcaactacttttgtagaat 8889462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 7045057 - 7045014
Alignment:
Q  146 taaaatctcaatcaaaattgaaggattttactcaactacttttg 189  Q
    ||||||| |||||||||| ||| |||||||||||||||||||||    
T  7045057 taaaatcgcaatcaaaatcgaatgattttactcaactacttttg 7045014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 17466378 - 17466323
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||  ||| |||||||||| |||| ||||||||||||||||| |||||    
T  17466378 aatcgtaaaattgcaaacaaaattgaaagattatactcaactacttttgtggaatc 17466323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 21314869 - 21314947
Alignment:
Q  110 gattttacttcagatcaaaagggaatagcaaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttg 189  Q
    |||||| ||||||||  |||||| |||||||||||| |||||  ||| |||||| | ||||||||||||||||| |||||    
T  21314869 gattttgcttcagattgaaaggggatagcaaaatcgaaaaattgcaaccaaaatcg-aggattttactcaactaattttg 21314947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 18459461 - 18459515
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    |||||||||||| |||| ||||| ||||||||| ||| ||||| |||||||||||    
T  18459461 aatcgtaaaatcgcaattaaaatcgaaggatttgacttaactaattttgtagaat 18459515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 20812829 - 20812791
Alignment:
Q  154 caatcaaaattgaaggattttactcaactacttttgtag 192  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  20812829 caatcaaatttgaaggattttactcaattacttttgtag 20812791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 5884129 - 5884165
Alignment:
Q  160 aaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  5884129 aaatcgaaggattttactcaactatttttgtagaatc 5884165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 18304593 - 18304696
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtag 192  Q
    |||||||| |||||||||| || ||||||| || ||||| || ||||||||||||||||| || ||||||| ||||||||||||| ||  ||||||||||    
T  18304593 aaggttgtcaaaatcgggacttcacttcaggtcgaaaggaaaaagcaaaatcgtaaaatcgcattcaaaatcgaaggattttactaaaggacttttgtag 18304692  T
Q  193 aatc 196  Q
    ||||    
T  18304693 aatc 18304696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 17055751 - 17055804
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  17055751 tcgtaaaatcgcaatcaaaatcgaaggattttactcaactacttttgtagaatc 17055804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 14074258 - 14074368
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| |||||| ||| |||||||||| || ||||||||||||||||| |       ||||||| |||||||||| ||||||||||||||||  |||    
T  14074258 aaggttgtcaaaatcaggactttacttcaggtcgaaagggaatagcaaaattggaactcataaaatcacaatcaaaatcgaaggattttactcaaggact 14074357  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  14074358 tttgtagaatc 14074368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 196
Target Start/End: Original strand, 21846050 - 21846159
Alignment:
Q  94 aggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactactt 186  Q
    ||||||| |||||| ||| |||||| ||| || |||||||||||||||||||       ||||||| |||||||||| ||||||||||||||||  ||||    
T  21846050 aggttgtcaaaatcaggactttactccaggtcgaaagggaatagcaaaatcgggactcttaaaatcgcaatcaaaatcgaaggattttactcaaggactt 21846149  T
Q  187 ttgtagaatc 196  Q
    ||||||||||    
T  21846150 ttgtagaatc 21846159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 196
Target Start/End: Original strand, 16125232 - 16125340
Alignment:
Q  95 ggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaat-------cgtaaaatctcaatcaaaattgaaggattttactcaactacttt 187  Q
    ||||||||||||||| | |||||||||| || ||||||||||| |||||       ||||||||| |||||||||| ||||||||||||||||  || ||    
T  16125232 ggttgttaaaatcggaactttacttcaggtcgaaagggaatagtaaaattgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacatt 16125331  T
Q  188 tgtagaatc 196  Q
    |||||||||    
T  16125332 tgtagaatc 16125340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 47786157 - 47786103
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    |||||||||||| ||| |||||| |||||||||||||||||||||||||||||||    
T  47786157 aatcgtaaaatcacaaccaaaatcgaaggattttactcaactacttttgtagaat 47786103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 21242845 - 21242912
Alignment:
Q  129 agggaatagcaaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||| |||||||||||||||  ||| | |||||||| |||||||||||||| ||||||||||||    
T  21242845 agggaataacaaaatcgtaaaatcgtaattacaattgaagaattttactcaactaattttgtagaatc 21242912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 12513625 - 12513518
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| ||||| |||||||| |||||| ||||||| ||| ||||||||||       ||||||| ||| ||||||  ||||||||||||||||||||    
T  12513625 aaggttgtcaaaattgggattttgcttcaggtcaaaagagaagagcaaaatcgacaattgtaaaatcgcaaccaaaatcaaaggattttactcaactact 12513526  T
Q  186 tttgtaga 193  Q
    | ||||||    
T  12513525 tctgtaga 12513518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 23528953 - 23528900
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||| |||||||||| ||||||||||||||||  ||||||||||||||    
T  23528953 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatc 23528900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 13100544 - 13100434
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| |||||||||| |||||||||  || ||||||||| |||||||||       ||||||| ||||||||||  |||||||||||||||  ||     
T  13100544 aaggttgtcaaaatcgggactttacttcaagtcgaaagggaatggcaaaatcggaactcgtaaaatcgcaatcaaaatcaaaggattttactcaaggaca 13100445  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  13100444 tttgtagaatc 13100434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 16434810 - 16434754
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    |||||||||||||  |||||||||| |||||||||||||| || |||||||||||||    
T  16434810 aaaatcgtaaaattgcaatcaaaatcgaaggattttactcgacaacttttgtagaat 16434754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 196
Target Start/End: Original strand, 19009743 - 19009833
Alignment:
Q  113 tttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    ||||||||||||| |||||||||||||||||||       ||||||| ||||||||||  |||||||||||||||  ||||||||| ||||    
T  19009743 tttacttcagatcgaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcaaaggattttactcaagaacttttgtaaaatc 19009833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 25146543 - 25146637
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaat-------cgtaaaatctcaatcaaaattgaaggattttactcaa 180  Q
    |||||||| |||||| ||| |||||||||| |  |||||||||||||||||       ||||||||| |||||||||| ||||||||||||||||    
T  25146543 aaggttgtcaaaatcaggactttacttcaggttgaaagggaatagcaaaatcggaaatcgtaaaatcgcaatcaaaatcgaaggattttactcaa 25146637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 30619299 - 30619186
Alignment:
Q  88 caacaaaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcgtaaa------atctcaatcaaaattgaaggattttactcaac 181  Q
    |||| |||||||| |||||||||||||| |||||| || |||| ||| ||||||||||  ||      ||| |||  ||||| |||||||||||||||||    
T  30619299 caaccaaggttgtcaaaatcgggatttt-cttcaggtcgaaagagaagagcaaaatcgacaatcgtaaatcgcaacaaaaatcgaaggattttactcaac 30619201  T
Q  182 tacttttgtagaatc 196  Q
    |||||||||||||||    
T  30619200 tacttttgtagaatc 30619186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 9954771 - 9954823
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg 145  Q
    |||||||| |||||||||| ||||||| || || |||||||||||||||||||    
T  9954771 aaggttgtcaaaatcgggactttacttaaggtcgaaagggaatagcaaaatcg 9954823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 17869529 - 17869635
Alignment:
Q  97 ttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactacttttg 189  Q
    |||| |||||||||| | || ||||| ||||||||||| ||||||||||       ||||||| ||||||||||  |||||||||||||||  ||||||     
T  17869529 ttgtcaaaatcgggactctaattcaggtcaaaagggaagagcaaaatcgggacacgtaaaatcgcaatcaaaatcaaaggattttactcaaggactttta 17869628  T
Q  190 tagaatc 196  Q
    |||||||    
T  17869629 tagaatc 17869635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 41032548 - 41032658
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaat-------cgtaaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| ||||| ||||||||||||||| |  |||| ||| ||||||||       ||||||||| |||  ||||| |||| |||||||||||||| |    
T  41032548 aaggttgtcaaaatagggattttacttcaggttgaaagagaagagcaaaattgataatcgtaaaatcgcaactaaaatcgaagaattttactcaactagt 41032647  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  41032648 tttgtagaatc 41032658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 9351838 - 9351951
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| ||||||  || |||||||||| || |||| ||||||||||||||       ||||||| |||||||||| | |||||||||  |||  |||    
T  9351838 aaggttgtcaaaatcaagactttacttcaggtcgaaagcgaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgtaggattttatccaaggact 9351937  T
Q  186 tttgtagaatctat 199  Q
    ||||||||||||||    
T  9351938 tttgtagaatctat 9351951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 196
Target Start/End: Original strand, 17197313 - 17197414
Alignment:
Q  102 aaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactacttttgtagaa 194  Q
    |||||||||| |||||||||  || ||||||| |||||||||||       ||||||| |||  ||||| ||||||||||||||||  ||||||||||||    
T  17197313 aaaatcgggactttacttcaagtcgaaagggagtagcaaaatcggaactcgtaaaatcgcaactaaaatcgaaggattttactcaaggacttttgtagaa 17197412  T
Q  195 tc 196  Q
    ||    
T  17197413 tc 17197414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 32881619 - 32881564
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||| |||   |||| |||||||||||||||||||| |||||||||||    
T  32881619 aatcgtaaaatcgcaactgaaatcgaaggattttactcaactacgtttgtagaatc 32881564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 27917176 - 27917225
Alignment:
Q  95 ggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatc 144  Q
    |||||||||||| || ||||| ||||||||||||||| || |||||||||    
T  27917176 ggttgttaaaattggaattttgcttcagatcaaaaggaaagagcaaaatc 27917225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 8773565 - 8773513
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    |||||||||| |||| ||||||||||||||||||| ||  | |||||||||||    
T  8773565 tcgtaaaatcgcaattaaaattgaaggattttacttaaggatttttgtagaat 8773513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 39845083 - 39845135
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgta 191  Q
    ||||| |||||||  |||| ||||||||| ||||||||||||||| |||||||    
T  39845083 aaaattgtaaaattgcaattaaaattgaatgattttactcaactatttttgta 39845135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 10872489 - 10872600
Alignment:
Q  92 aaaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactac 184  Q
    ||||||||| |||||| |||||||||||||| ||||||||||| || ||||||        ||||||| |||||||||||||||||||||||| ||||||    
T  10872489 aaaggttgtcaaaatcaggattttacttcaggtcaaaagggaagagaaaaatcaaaaatcataaaatcgcaatcaaaattgaaggattttactaaactac 10872588  T
Q  185 ttttgtagaatc 196  Q
    ||||| ||||||    
T  10872589 ttttgaagaatc 10872600  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 17064606 - 17064551
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  17064606 aatcgtaaaatcgcaatcaaaatcgaaggattttactcaactacttttgtagaatc 17064551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 41671533 - 41671426
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| |||||||||||||| |||||| || |||| ||| ||||||||||       ||||||| ||| |||||| |||||||||||||||||||||    
T  41671533 aaggttgtcaaaatcgggattttgcttcaggtcgaaagagaagagcaaaatcgataattgtaaaatcgcaaccaaaatcgaaggattttactcaactact 41671434  T
Q  186 tttgtaga 193  Q
    ||||||||    
T  41671433 tttgtaga 41671426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 24619972 - 24620082
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| |||||||| | |||||||||  |||||||||||||||||||| |       ||||||| |||||||||| ||||||||||||||||  |||    
T  24619972 aaggttgtcaaaatcggaactttacttcaagtcaaaagggaatagcaaaattgggacttgtaaaatcgcaatcaaaatcgaaggattttactcaaagact 24620071  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  24620072 tttgtagaatc 24620082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 27676787 - 27676680
Alignment:
Q  96 gttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactactttt 188  Q
    |||||||||||| ||||||| |||||  || |||||||| ||||||||||       ||||||| |||||||||| ||| ||||||||||||||||||||    
T  27676787 gttgttaaaatcaggattttgcttcaagtcgaaagggaagagcaaaatcgaaaatcttaaaatcgcaatcaaaatcgaaagattttactcaactactttt 27676688  T
Q  189 gtagaatc 196  Q
    ||| ||||    
T  27676687 gtaaaatc 27676680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 6860985 - 6861065
Alignment:
Q  92 aaaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcgtaaaatctcaatcaaaattgaaggatt 172  Q
    ||||||||| ||||| |||||||| |||||| || ||||||||||| |||||| ||||||| |||||||||| || |||||    
T  6860985 aaaggttgtcaaaattgggattttgcttcaggtcgaaagggaatagtaaaatcataaaatcgcaatcaaaatcgatggatt 6861065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 8592174 - 8592284
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    ||||||||  ||||||||| |||||||||  || ||||| |||||||||||||       ||||||| |||||||||| ||||||||||||||||  |||    
T  8592174 aaggttgtcgaaatcgggactttacttcaagtcgaaaggaaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggact 8592273  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  8592274 tttgtagaatc 8592284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 28136061 - 28136011
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgta 191  Q
    |||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  28136061 aatcgtaaaatcgctatcaaaatcgaaggattttactcaactacttttgta 28136011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 3041568 - 3041469
Alignment:
Q  102 aaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactacttttgtagaa 194  Q
    ||||||||||||||||||||  || ||| ||| |||||||||||       ||||||| |||||||||| ||||||||||||||||  ||||||||||||    
T  3041568 aaaatcgggattttacttcaagtcgaaatggagtagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaa 3041469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 6136397 - 6136454
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||||| ||||||||||  || |||||||||||||||||||| |||||||    
T  6136397 aaaatcgtaaaatcgcaatcaaaatcaaaagattttactcaactacttttatagaatc 6136454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 13286241 - 13286188
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||| ||||||||||  || ||||||||||||||||||||||||||||    
T  13286241 tcgtaaaatcgcaatcaaaatcaaaagattttactcaactacttttgtagaatc 13286188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 17796866 - 17796809
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||||  |||| ||||| |||| |||||||||||||||||||||||||||    
T  17796866 aaaatcgtaaaattgcaattaaaatcgaagcattttactcaactacttttgtagaatc 17796809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 19105306 - 19105249
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||||  |||| ||||| |||| |||||||||||||||||||||||||||    
T  19105306 aaaatcgtaaaattgcaattaaaatcgaagcattttactcaactacttttgtagaatc 19105249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 22971106 - 22971054
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    |||||||||| |||||||||| ||||||||||||||||  |||||||||||||    
T  22971106 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaat 22971054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 28746130 - 28746020
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| ||||| |||| |||||||||| || ||||  |||||||||||||       ||||||| |||||||||| |||| |||||||||||  |||    
T  28746130 aaggttgtcaaaattgggactttacttcaggtcgaaagaaaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaagaattttactcaagaact 28746031  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  28746030 tttgtagaatc 28746020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 3449140 - 3449195
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||| ||| |||||| ||| ||||||| ||||||||||||||||||||    
T  3449140 aatcgtaaaatcgcaaccaaaatcgaatgattttattcaactacttttgtagaatc 3449195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 195
Target Start/End: Complemental strand, 29067630 - 29067522
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| |||||||| | |||||||||| || || ||||||||||||||||       ||||||||||||| |||| ||||||||||||||||  | |    
T  29067630 aaggttgtcaaaatcggaactttacttcaggtcgaatgggaatagcaaaatcggaactcataaaatctcaatc-aaatcgaaggattttactcaaggatt 29067532  T
Q  186 tttgtagaat 195  Q
    ||||||||||    
T  29067531 tttgtagaat 29067522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 42697143 - 42697092
Alignment:
Q  145 gtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||| |||  ||||||||||||||||| ||||||||||||||||||||    
T  42697143 gtaaaatcgcaactaaaattgaaggattttattcaactacttttgtagaatc 42697092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 20756319 - 20756266
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||| |||||||||||||| ||||||||||||  | ||||||||||||    
T  20756319 tcgtaaaatcgcaatcaaaattgaaagattttactcaaggatttttgtagaatc 20756266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 8560232 - 8560326
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaa-------tcgtaaaatctcaatcaaaattgaaggattttactcaa 180  Q
    |||||| | |||||||||| |||||||||  |||||||||| ||||||||       |||| ||||| |||||||||| ||||||||||||||||    
T  8560232 aaggttatcaaaatcgggactttacttcaagtcaaaagggagtagcaaaatcgagactcgtgaaatcgcaatcaaaatcgaaggattttactcaa 8560326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 22137572 - 22137521
Alignment:
Q  145 gtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||| ||| ||||||  ||| |||||||||||||||||||||||||||    
T  22137572 gtaaaatcacaaccaaaatcaaagaattttactcaactacttttgtagaatc 22137521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 25870152 - 25870207
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||| ||| ||||||  ||||||||||||||||||  |||||||||||    
T  25870152 aatcgtaaaatcgcaaccaaaatcaaaggattttactcaactaagtttgtagaatc 25870207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 24649524 - 24649574
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaat 143  Q
    |||||||| ||||| |||| |||||||||| || |||||||||||||||||    
T  24649524 aaggttgtcaaaattgggactttacttcaggtcgaaagggaatagcaaaat 24649574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 13006126 - 13006089
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttac 176  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  13006126 aaaatcgtaaaatcgcaatcaaaattgaatgattttac 13006089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 18014288 - 18014251
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaa 180  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  18014288 tcgtaaaatcgcaatcaaaatcgaaggattttactcaa 18014251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 56200 - 56310
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| ||||||| || |||||||||| || |||||||||||||||||||       ||||||| |||||||||| ||||||||||||||||  |||    
T  56200 aaggttgtcaaaatcgagactttacttcaggtcgaaagggaatagcaaaatcgagacatctaaaatcgcaatcaaaatcgaaggattttactcaaggact 56299  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  56300 tttgtagaatc 56310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 7223869 - 7223759
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaa-------tcgtaaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| |||||||||| |||||||||| || ||||||||||||||||       |||||||||  |||||||||| ||||||||||||||||  |||    
T  7223869 aaggttgtcaaaatcgggactttacttcaggtcgaaagggaatagcaaaatcgggactcgtaaaattgcaatcaaaatcgaaggattttactcaaggact 7223770  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  7223769 tttgtagaatc 7223759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 22498215 - 22498325
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaat-------cgtaaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| ||||| |||| |||||||||| || |||||||||||||||||       ||||||||| |||||||||||||| ||||||||||||  |||    
T  22498215 aaggttgtcaaaattgggactttacttcaggtcgaaagggaatagcaaaattgggactcgtaaaatcgcaatcaaaattgaacgattttactcaaagact 22498314  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  22498315 tttgtagaatc 22498325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 4841611 - 4841714
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtag 192  Q
    |||||| |||||||||||||||| ||| |  || ||||  || ||| |||||| |||||| ||||||||||  |||||||||||||||||||||||||||    
T  4841611 aaggtttttaaaatcgggattttgctttacgtcgaaagtaaagagcgaaatcgaaaaatcacaatcaaaatcaaaggattttactcaactacttttgtag 4841710  T
Q  193 aatc 196  Q
    ||||    
T  4841711 aatc 4841714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 195
Target Start/End: Original strand, 3573673 - 3573784
Alignment:
Q  92 aaaggttgttaaaatcgggattttacttcagatc-aaaagggaatagcaaaa-------tcgtaaaatctcaatcaaaattgaaggattttactcaacta 183  Q
    ||||||||| |||||||||| |||||||||| || |||||||||||||||||       |||||||||| |||||||||| | |||| ||||||||||||    
T  3573673 aaaggttgtcaaaatcgggactttacttcaggtcgaaaagggaatagcaaaatcaggactcgtaaaatcgcaatcaaaatcgtaggaatttactcaacta 3573772  T
Q  184 cttttgtagaat 195  Q
    || |||||||||    
T  3573773 ctcttgtagaat 3573784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 196
Target Start/End: Original strand, 30912176 - 30912291
Alignment:
Q  88 caacaaaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatc-------gtaaaatctcaatcaaaattgaaggattttactcaa 180  Q
    |||| |||||||| |||||||| ||||| |||||| |  |||| |||||||||||||       |||||||||||| |||||||||||||||||| ||||    
T  30912176 caactaaggttgtcaaaatcggaattttgcttcaggttgaaagagaatagcaaaatcgataatcgtaaaatctcaaccaaaattgaaggattttattcaa 30912275  T
Q  181 ctacttttgtagaatc 196  Q
    ||||||||||| ||||    
T  30912276 ctacttttgtaaaatc 30912291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 17543505 - 17543615
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||||||||| |||| |||||||||| || ||| |||||||||||||||       |||||||  ||||||||| ||||||||||||||||  |||    
T  17543505 aaggttgttaaaattgggactttacttcaggtcgaaaaggaatagcaaaatcgggactcataaaatcgaaatcaaaatcgaaggattttactcaaggact 17543604  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  17543605 tttgtagaatc 17543615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 19748687 - 19748577
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| |||||||||| |||| ||||| |  |||||||||||||||||||       ||||||| |||||||||| ||||||||||||||||  |||    
T  19748687 aaggttgtcaaaatcgggactttaattcaggttgaaagggaatagcaaaatcgggattcgtaaaatcgcaatcaaaatcgaaggattttactcaaggact 19748588  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  19748587 tttgtagaatc 19748577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 2912091 - 2912145
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    ||||||||||||  |||| ||||||||||||||||||||||||||||||||||||    
T  2912091 aatcgtaaaatcataatcgaaattgaaggattttactcaactacttttgtagaat 2912145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 20432421 - 20432478
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||    
T  20432421 aaaatcgtaaaatcgcaatcaaaattgaagaattttacttaactagttttgtagaatc 20432478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 11327337 - 11327447
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| |||||||||  |||||||||| |  |||||||||||||||||||       ||||||| |||||||||| |||| |||||||||||  |||    
T  11327337 aaggttgtcaaaatcggggctttacttcaggttgaaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaagaattttactcaaggact 11327436  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  11327437 tttgtagaatc 11327447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 86 - 196
Target Start/End: Complemental strand, 17103556 - 17103439
Alignment:
Q  86 tccaacaaaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatc-------gtaaaatctcaatcaaaattgaaggattttactc 178  Q
    |||||| |||||||| |||||||||| |||||||||  || |||||||||| |||||||       |||||||| ||||||| |  ||||||||||||||    
T  17103556 tccaaccaaggttgtcaaaatcgggactttacttcaagtcgaaagggaataacaaaatcaggactcgtaaaatcgcaatcaataccgaaggattttactc 17103457  T
Q  179 aactacttttgtagaatc 196  Q
    ||  ||||||||||||||    
T  17103456 aaggacttttgtagaatc 17103439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 1179126 - 1179068
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaat-tgaaggattttactcaactacttttgtagaatc 196  Q
    |||||| |||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  1179126 aaaatcctaaagtcgcaatcaaaatctgaaggattttactcaactacttttgtagaatc 1179068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 195
Target Start/End: Original strand, 7621749 - 7621859
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcgtaaaatctcaa--------tcaaaattgaaggattttactcaactac 184  Q
    |||||||| || |||| ||||||||||  |||| |||||||||| |||||||| ||||||  ||        |||||||||||| |||||||||||||||    
T  7621749 aaggttgtcaagatcgagattttacttacgatcgaaagggaataacaaaatcgaaaaatcataaaactgttatcaaaattgaagaattttactcaactac 7621848  T
Q  185 ttttgtagaat 195  Q
    |||||||||||    
T  7621849 ttttgtagaat 7621859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 26053074 - 26053181
Alignment:
Q  96 gttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaat-------cgtaaaatctcaatcaaaattgaaggattttactcaactactttt 188  Q
    ||||| |||||| ||| |||||||||| || ||||| |||||||||||       ||||||||| |||||||||| ||| ||||||||||||  ||||||    
T  26053074 gttgtcaaaatcaggactttacttcaggtcgaaaggaaatagcaaaattgggactcgtaaaatcccaatcaaaatcgaatgattttactcaatgactttt 26053173  T
Q  189 gtagaatc 196  Q
    ||||||||    
T  26053174 gtagaatc 26053181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 26073127 - 26073234
Alignment:
Q  96 gttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaat-------cgtaaaatctcaatcaaaattgaaggattttactcaactactttt 188  Q
    ||||| |||||| ||| |||||||||| || ||||| |||||||||||       ||||||||| |||||||||| ||| ||||||||||||  ||||||    
T  26073127 gttgtcaaaatcaggactttacttcaggtcgaaaggaaatagcaaaattgggactcgtaaaatcccaatcaaaatcgaatgattttactcaatgactttt 26073226  T
Q  189 gtagaatc 196  Q
    ||||||||    
T  26073227 gtagaatc 26073234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 27890683 - 27890630
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    ||||||||||  ||||||||||||||||||||||||||  ||||||||||||||    
T  27890683 tcgtaaaatcgtaatcaaaattgaaggattttactcaaggacttttgtagaatc 27890630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 7918125 - 7918235
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatc-------gtaaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| |||||||||  |||||||||| || ||||||||||||| ||||       |||||||  |||||||||| |||| |||||||||||  |||    
T  7918125 aaggttgtcaaaatcggggctttacttcaggtcgaaagggaatagcagaatcaggactcgtaaaattgcaatcaaaatcgaagaattttactcaaggact 7918224  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  7918225 tttgtagaatc 7918235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 27233074 - 27233168
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaa 180  Q
    |||||||| ||||||| |  |||||||||| ||||||||||||  ||||||||       ||||||| |||||||||||||||||||||||||||    
T  27233074 aaggttgtcaaaatcgagcctttacttcaggtcaaaagggaatgacaaaatcgggactcataaaatcgcaatcaaaattgaaggattttactcaa 27233168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 15527946 - 15527995
Alignment:
Q  147 aaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||| |||||||||| ||||||||||||||||  ||||||||||||||    
T  15527946 aaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatc 15527995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 4596681 - 4596737
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    ||||| |||||||  ||||||||||||||||||| ||||||| ||||||| ||||||    
T  4596681 aaaattgtaaaattgcaatcaaaattgaaggattctactcaattacttttctagaat 4596737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 20399902 - 20399958
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    ||||| |||||||| |||| |||||||||| |||||||||||||  |||||||||||    
T  20399902 aaaattgtaaaatcacaataaaaattgaagaattttactcaacttgttttgtagaat 20399958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 20981458 - 20981363
Alignment:
Q  100 ttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||| ||| ||| || |  ||||| ||||||||||||  ||||||  |||||||||  ||| ||||||||||||| |||||||||||||    
T  20981458 ttaaaatcgggacttttctttaggtttaaaggaaatagcaaaatcc-aaaatcgtaatcaaaatcaaagaattttactcaactgcttttgtagaatc 20981363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 23898109 - 23898055
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    ||||||||||||  || |||||| |||||||||||||||||||| |||||||||||    
T  23898109 aatcgtaaaatcgaaaccaaaatcgaaggattttactcaactac-tttgtagaatc 23898055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 33592930 - 33593034
Alignment:
Q  97 ttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaat-------cgtaaaatctcaatcaaaattgaaggattttactcaactacttttg 189  Q
    |||| |||||||||||||| ||||| ||| |||||||||| ||||||       ||||||||  ||||| |||| ||| ||||| |||||||||||||||    
T  33592930 ttgtcaaaatcgggattttgcttcatatcgaaagggaataacaaaattgaaaatcgtaaaattgcaatcgaaatcgaatgattt-actcaactacttttg 33593028  T
Q  190 tagaat 195  Q
    ||||||    
T  33593029 tagaat 33593034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 4594748 - 4594793
Alignment:
Q  100 ttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg 145  Q
    |||||||||||||||| ||||||||| ||||| || ||||||||||    
T  4594748 ttaaaatcgggattttgcttcagatcgaaaggtaagagcaaaatcg 4594793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 180
Target Start/End: Original strand, 27614488 - 27614525
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaa 180  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  27614488 tcgtaaaatcacaatcaaaatcgaaggattttactcaa 27614525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 25538917 - 25539030
Alignment:
Q  90 acaaaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaact 182  Q
    ||||||||||| |||||||| | ||||| |||| || ||||||||||| |||||||       ||||||| ||||||||||| |||||||||||| ||||    
T  25538917 acaaaggttgtcaaaatcggtactttacatcaggtcgaaagggaatagaaaaatcgggtctcgtaaaatcgcaatcaaaattaaaggattttactgaact 25539016  T
Q  183 acttttgtagaatc 196  Q
    ||||||||||||||    
T  25539017 acttttgtagaatc 25539030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 1405138 - 1405027
Alignment:
Q  92 aaaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactac 184  Q
    ||||||||| ||||||| || |||| || || ||||||||||||||||||||||       ||||||| |||||||||| ||||||||||||||||  ||    
T  1405138 aaaggttgtcaaaatcgagactttaatttaggtcaaaagggaatagcaaaatcggtactcataaaatcgcaatcaaaatcgaaggattttactcaagaac 1405039  T
Q  185 ttttgtagaatc 196  Q
    ||||||||||||    
T  1405038 ttttgtagaatc 1405027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 16767086 - 16767029
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  16767086 aaaatcataaaatcgcaatcaaaattgaaggattttactcaactacttttatagaatc 16767029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 19245943 - 19245833
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatc-------gtaaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| |||||||||||||| |||||  |  ||||||||||||||||||       |||||||| ||||||||||  |||||||||||| |||||||    
T  19245943 aaggttgtcaaaatcgggattttgcttcaagttgaaagggaatagcaaaatcaaaaatcgtaaaatcgcaatcaaaatctaaggattttacttaactact 19245844  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  19245843 tttgtagaatc 19245833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 102 - 196
Target Start/End: Original strand, 20034006 - 20034107
Alignment:
Q  102 aaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactacttttgtagaa 194  Q
    |||||||||| |||||||||  || ||||||| |||||||||||       ||||||| |||||||||||||||||||||||||||  ||||||||||||    
T  20034006 aaaatcgggactttacttcaagtcgaaagggagtagcaaaatcgagactcgtaaaatcgcaatcaaaattgaaggattttactcaaggacttttgtagaa 20034105  T
Q  195 tc 196  Q
    ||    
T  20034106 tc 20034107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 8428576 - 8428466
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| |||||||||||||| ||| || || ||||||||||| ||||||        ||||||| |||||||||| |||||||||| |||||||| |    
T  8428576 aaggttgtcaaaatcgggattttgctttaggtcgaaagggaatagaaaaatcaaaaattctaaaatcgcaatcaaaatcgaaggattttgctcaactatt 8428477  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  8428476 tttgtagaatc 8428466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 13502501 - 13502561
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatctat 199  Q
    ||||||||||||||  ||||||||||||||||| ||| ||||||| |||||||||||||||    
T  13502501 aaaatcgtaaaatcgtaatcaaaattgaaggatattagtcaactatttttgtagaatctat 13502561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 20064077 - 20063967
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||||| |||||||||  |||||||||| |  |||||||||||||||||||       ||||||| |||||||||| |||| |||||||||||  |||    
T  20064077 aaggttgtcaaaatcggggctttacttcaggttgaaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaagaattttactcaaggact 20063978  T
Q  186 tttgtagaatc 196  Q
    |||||||||||    
T  20063977 tttgtagaatc 20063967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 27523881 - 27523981
Alignment:
Q  103 aaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    ||||||||| |||||||||  || ||||||| |||||||||||       ||||||| |||||||||| ||||||||||||||||  |||||||||||||    
T  27523881 aaatcgggactttacttcaagtcgaaagggagtagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaat 27523980  T
Q  196 c 196  Q
    |    
T  27523981 c 27523981  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 974635 - 974582
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||| |||||||||| ||||||||||||||||  ||||||||||||||    
T  974635 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatc 974582  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 31237755 - 31237861
Alignment:
Q  97 ttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactacttttg 189  Q
    |||| |||||| ||| |||||||||| |||||||||||||| |||||||       ||||||| ||||||| || ||||||||||||||||  |||||||    
T  31237755 ttgtcaaaatcaggactttacttcagttcaaaagggaatagtaaaatcgggactcgtaaaatcgcaatcaatatcgaaggattttactcaaggacttttg 31237854  T
Q  190 tagaatc 196  Q
    || ||||    
T  31237855 taaaatc 31237861  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 34578183 - 34578133
Alignment:
Q  146 taaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    ||||||| ||||||||||||||||||||||||||   ||||||||||||||    
T  34578183 taaaatcgcaatcaaaattgaaggattttactcatggacttttgtagaatc 34578133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 7302079 - 7302026
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||  |||||||||| ||||||||||||||||  ||||||||||||||    
T  7302079 tcgtaaaattgcaatcaaaatcgaaggattttactcaaggacttttgtagaatc 7302026  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 19262148 - 19262201
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||| |||||||||| ||| ||||||||||||  ||||||||||||||    
T  19262148 tcgtaaaatcgcaatcaaaatcgaaagattttactcaaggacttttgtagaatc 19262201  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 15628029 - 15627986
Alignment:
Q  155 aatcaaaattgaaggattttactcaactacttttgtagaatcta 198  Q
    ||||||||| ||||| ||||||||||||||||||||||| ||||    
T  15628029 aatcaaaatcgaaggtttttactcaactacttttgtagagtcta 15627986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 16767223 - 16767185
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttact 177  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  16767223 aaaatcataaaatcgcaatcaaaattgaaggattttact 16767185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 27407092 - 27407042
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttg 189  Q
    |||||||||| ||| ||||||||||  ||| ||||||||||||||||||||    
T  27407092 aaaatcgtaatatcgcaatcaaaatccaagaattttactcaactacttttg 27407042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 36430145 - 36430092
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||| |||||||||| ||||||| ||||||||  | ||||||||||||    
T  36430145 tcgtaaaatcgcaatcaaaatcgaaggatattactcaataatttttgtagaatc 36430092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 27749338 - 27749394
Alignment:
Q  140 aaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    ||||||||||||| ||||| |||||||| || |||||||||  | ||||||||||||    
T  27749338 aaatcgtaaaatcgcaatctaaattgaatgagtttactcaaggatttttgtagaatc 27749394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 31062347 - 31062311
Alignment:
Q  154 caatcaaaattgaaggattttactcaactacttttgt 190  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  31062347 caatcaaaatcgaaagattttactcaactacttttgt 31062311  T

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Target: scaffold0534 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 1024 - 916
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaat-------cgtaaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||| |||||||| ||||||| |||||| ||||||||||| ||||||||       ||||||||  |||||||||| |||| ||||||||||||||||    
T  1024 aaggtttttaaaatcaggattttgcttcaggtcaaaagggaagagcaaaattgaaaatcgtaaaattgcaatcaaaatcgaagaattttactcaactact 925  T
Q  186 tttgtagaa 194  Q
    |||||||||    
T  924 tttgtagaa 916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 8795 - 8685
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg-------taaaatctcaatcaaaattgaaggattttactcaactact 185  Q
    |||||| | |||||||||| |||||||||| || |||||||||| ||||||||       ||||||| ||||||||||||||||||||||||||| || |    
T  8795 aaggttctcaaaatcgggactttacttcaggtcgaaagggaataacaaaatcggaactcgtaaaatcgcaatcaaaattgaaggattttactcaagtatt 8696  T
Q  186 tttgtagaatc 196  Q
    || ||||||||    
T  8695 ttcgtagaatc 8685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 8787 - 8843
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    |||||| |||||||  ||||||||| |||||||||||||||||||||||||||||||    
T  8787 aaaatcataaaatcgtaatcaaaatcgaaggattttactcaactacttttgtagaat 8843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 145889 - 145832
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||||||  |||||||||| |||||||||||||||  |||||||||||||||    
T  145889 aaaatcgtaaaatagcaatcaaaatcgaaggattttactcacttacttttgtagaatc 145832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 93534 - 93590
Alignment:
Q  140 aaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||| ||||||||  ||||||||| ||||||||||| ||||||||||||||||||||    
T  93534 aaattgtaaaatcgtaatcaaaatcgaaggattttattcaactacttttgtagaatc 93590  T

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Target: scaffold0150 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 33239 - 33182
Alignment:
Q  139 aaaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    ||||| |||||||| |||||||||| |||| ||||||||||  |||||||||||||||    
T  33239 aaaattgtaaaatcgcaatcaaaatcgaagaattttactcacttacttttgtagaatc 33182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 14758 - 14811
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||| |||||||||| ||||||||||| ||||  ||||||||||||||    
T  14758 tcgtaaaatcgcaatcaaaatcgaaggattttattcaaagacttttgtagaatc 14811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 132947 - 133000
Alignment:
Q  143 tcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    |||||||||| |||||||||| |||||||||| |||||  ||||||||||||||    
T  132947 tcgtaaaatcgcaatcaaaatcgaaggattttcctcaaggacttttgtagaatc 133000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 34 - 88
Alignment:
Q  141 aatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaatc 196  Q
    ||||||||||||  || |||||| |||||||||||||||||||| |||||||||||    
T  34 aatcgtaaaatcgaaaccaaaatcgaaggattttactcaactac-tttgtagaatc 88  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 142929 - 142874
Alignment:
Q  140 aaatcgtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    ||||| ||||||| |||| ||||||||||||||||||||||  | |||||||||||    
T  142929 aaatcctaaaatcgcaattaaaattgaaggattttactcaaggagttttgtagaat 142874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 7289 - 7339
Alignment:
Q  145 gtaaaatctcaatcaaaattgaaggattttactcaactacttttgtagaat 195  Q
    ||||||||  ||||||||| |||||||||||||||| ||||||||| ||||    
T  7289 gtaaaatcgtaatcaaaatcgaaggattttactcaagtacttttgttgaat 7339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2084 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold2084
Description:

Target: scaffold2084; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 182 - 130
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg 145  Q
    |||||| | |||||||||| |||||||||  |||||||||| |||||||||||    
T  182 aaggttatcaaaatcgggactttacttcaagtcaaaagggagtagcaaaatcg 130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 38302 - 38354
Alignment:
Q  93 aaggttgttaaaatcgggattttacttcagatcaaaagggaatagcaaaatcg 145  Q
    |||||||| |||||||||| |||||||||  || ||||| |||||||||||||    
T  38302 aaggttgtcaaaatcgggactttacttcaagtcgaaaggaaatagcaaaatcg 38354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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