View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10779_low_2 (Length: 439)
Name: NF10779_low_2
Description: NF10779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10779_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 247 - 434
Target Start/End: Complemental strand, 37975497 - 37975310
Alignment:
| Q |
247 |
tgagaaataagaaactgcggcatcatttctagaagttgtcccatttaaatttgagtactgatcgacaaaaccaccaccatgaccataacctgaattcact |
346 |
Q |
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| T |
37975497 |
tgagaaataagaaactgcggcatcatttctagaagttgtcccatttaaatttgagtactgatcgacaaaaccaccaccatgaccataacctgaattcact |
37975398 |
T |
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| Q |
347 |
acatcatcataatgatgcacatgatcattttgcaccatattcatcgacccattttgttgattttgattcagtttcttcctttgcttct |
434 |
Q |
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| T |
37975397 |
acatcatcatgatgatgcacatgatcattttgcaccatagtcatcgacccattttgttgattttgattcagtttcttccttttcttct |
37975310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 15 - 167
Target Start/End: Complemental strand, 37975781 - 37975629
Alignment:
| Q |
15 |
aaaaaccaaagcatataatagaacgaagtttcggtattaattagaacactacagaacactgataagctatcaataatgaccacacccttattacatatgt |
114 |
Q |
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| T |
37975781 |
aaaaaccaaagcatataatagaacgaagtttcggtattaattagaacactacagaacactgataagctatcaataatgaccacacccttattacatatgt |
37975682 |
T |
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| Q |
115 |
gagccctaccacattaatcatagaacctgacgatcatgattttacagttccta |
167 |
Q |
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| T |
37975681 |
gagccctaccacattaatcatagaacctgacgatcatgattttagagttccta |
37975629 |
T |
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