View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10779_low_9 (Length: 250)
Name: NF10779_low_9
Description: NF10779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10779_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 3646870 - 3646633
Alignment:
| Q |
1 |
ttgttccttccatcacagatacctcaatatcgctgtctttgcagccgttcaagcaacagtaaggaatcaaaacatgttatttgttgctactagttttgct |
100 |
Q |
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| T |
3646870 |
ttgttccttccatcacagatacctcaatatcgctgtctttgcagccgttcaagcaacagtaaggaatcaaaacatgttatttgttgctactagttttgct |
3646771 |
T |
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| Q |
101 |
tctacacccaatttaataatcaacatttcattttcatctaaatatgctttatccaccaggatcgccgcaacttgctataaatttattattatctatatat |
200 |
Q |
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| T |
3646770 |
tttacacccaatttaataatcaacatttcattttcatctaaatatgctttatccaccaggatcgccgcaacttgctataaatttattattatctttata- |
3646672 |
T |
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| Q |
201 |
ttttgtgcgatattgttaaggtttattgtctgcccctttg |
240 |
Q |
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||||| ||||||||||||||||||| ||||||||||||| |
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| T |
3646671 |
-tttgttcgatattgttaaggtttatcgtctgcccctttg |
3646633 |
T |
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