View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_high_11 (Length: 479)
Name: NF1077_high_11
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 83 - 476
Target Start/End: Complemental strand, 40375577 - 40375184
Alignment:
| Q |
83 |
atttttccatgatttagagaagctacaaattgtagctttcactttaatgtgtgtttgatgtccgttccaccgtgaaaacatagcataatatcatctgact |
182 |
Q |
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| T |
40375577 |
atttttccatgatttagagaagctacaaattgtagctttcactttaatgtgtgtttgatgtccgttccaccgtgaaaacatagcataatatcatctgact |
40375478 |
T |
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| Q |
183 |
tagacttgactctcgagtcctcgagtatagctgttcttcctttcgggtacatccatctcccttttgctgtgtaatttgactccaagttgggtcgggtggt |
282 |
Q |
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| T |
40375477 |
tagacttgactctcgagtcctcgagtatagctgttcttcctttcgggtacatccatctcccttttgctgtgtaatttgactccaagttgggtcgggtggt |
40375378 |
T |
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| Q |
283 |
gctttgctctataatcctatgtatctttttgttcccttatgtaagttccaacaattctttgcacaaagtcagtttttggtttggaccatgccatcatcaa |
382 |
Q |
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| T |
40375377 |
gctttgctctataatcctatgtatctttttgttcccttatgtaagttccaacaattctttgcacaaagtcagtttttggtttggaccatgccatcatcaa |
40375278 |
T |
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| Q |
383 |
tactatggataatgagtcaccatgtatgttcatattcaattacatggtcatatctcaggaatttatgcagccactcttttagctcaggtgtctg |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40375277 |
tactatggataatgagtcaccatgtatgttcatattcaattacatggtcatatctcaggaatttatgcagccactcttttagttcaggtgtctg |
40375184 |
T |
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