View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1077_high_12 (Length: 439)

Name: NF1077_high_12
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1077_high_12
NF1077_high_12
[»] chr8 (7 HSPs)
chr8 (1-212)||(18392820-18393031)
chr8 (336-377)||(35449141-35449182)
chr8 (210-285)||(35448945-35449026)
chr8 (238-285)||(774064-774112)
chr8 (238-285)||(10290465-10290513)
chr8 (236-279)||(42774150-42774194)
chr8 (238-285)||(43265310-43265358)
[»] chr3 (4 HSPs)
chr3 (213-285)||(28161064-28161137)
chr3 (233-279)||(16899683-16899730)
chr3 (238-285)||(4101209-4101257)
chr3 (238-277)||(48663334-48663374)
[»] chr5 (1 HSPs)
chr5 (238-297)||(33672799-33672859)
[»] chr6 (3 HSPs)
chr6 (235-285)||(6807616-6807667)
chr6 (221-285)||(5320406-5320471)
chr6 (336-373)||(6807463-6807500)
[»] chr2 (4 HSPs)
chr2 (235-285)||(38433073-38433124)
chr2 (238-285)||(1659330-1659378)
chr2 (235-285)||(17105946-17105997)
chr2 (211-278)||(234466-234534)
[»] chr7 (6 HSPs)
chr7 (213-303)||(34499930-34500029)
chr7 (235-280)||(36828074-36828120)
chr7 (221-285)||(37617737-37617802)
chr7 (211-278)||(38871238-38871311)
chr7 (238-285)||(4968682-4968730)
chr7 (282-314)||(38871334-38871366)
[»] chr4 (4 HSPs)
chr4 (235-279)||(29947905-29947950)
chr4 (235-285)||(13763341-13763392)
chr4 (343-377)||(29947743-29947777)
chr4 (213-303)||(41055020-41055120)
[»] scaffold0044 (1 HSPs)
scaffold0044 (235-285)||(83849-83900)
[»] chr1 (5 HSPs)
chr1 (221-278)||(52398284-52398342)
chr1 (246-291)||(126238-126283)
chr1 (210-285)||(47974398-47974479)
chr1 (216-278)||(23893340-23893402)
chr1 (238-277)||(24766424-24766464)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 18393031 - 18392820
Alignment:
Q  1 atcactacttgttgttgctagtattgctaagttaaaaaagaattacacagaatagttaatccccaaggtctttctacaacgaccaattcacatgctcaga 100  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18393031 atcactacttattgttgctagtattgctaagttaaaaaagagttacacagaatagttaatccccaaggtctttctacaacgaccaattcacatgctcaga 18392932  T
Q  101 tcataaagctcactctaagcacaacgtgcttcaatcatcttcaaccacaagtaaacttatgaatttaaattaaattaaatcacaaattgactatttatta 200  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18392931 tcataaagctcactctaagcacaatgtgcttcaatcatcatcaaccacaagtaaacttatgaatttaaattaaattaaatcacaaattgactatttatta 18392832  T
Q  201 cgtctcaaatac 212  Q
    ||||||||||||    
T  18392831 cgtctcaaatac 18392820  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 35449141 - 35449182
Alignment:
Q  336 ttgaaataaaacatgtcttatgcaattacacatgccataact 377  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  35449141 ttgaaataaaacatgtcttatgcaattacacatgccataact 35449182  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 285
Target Start/End: Original strand, 35448945 - 35449026
Alignment:
Q  210 tacctctgttatcaaagtggaaacac-----ggcgcggccaccc-aaaaattgacgcggtgcggtatgcgggcgcgatgcgg 285  Q
    ||||||||||||||||| |||||| |     ||||||||||||| ||||||||||||||  |||||||||||||||| ||||    
T  35448945 tacctctgttatcaaagcggaaacgcagcgcggcgcggccaccccaaaaattgacgcggcacggtatgcgggcgcgacgcgg 35449026  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 285
Target Start/End: Original strand, 774064 - 774112
Alignment:
Q  238 cgcggccaccc-aaaaattgacgcggtgcggtatgcgggcgcgatgcgg 285  Q
    ||||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  774064 cgcggccaccccaaaaattgacgcggcgcggtatgcgggcgcgacgcgg 774112  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 10290513 - 10290465
Alignment:
Q  238 cgcggccacc-caaaaattgacgcggtgcggtatgcgggcgcgatgcgg 285  Q
    |||||||||| |||||||||||| || ||||||||||||||||| ||||    
T  10290513 cgcggccacctcaaaaattgacgtggcgcggtatgcgggcgcgacgcgg 10290465  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 279
Target Start/End: Original strand, 42774150 - 42774194
Alignment:
Q  236 ggcgcggccaccc-aaaaattgacgcggtgcggtatgcgggcgcg 279  Q
    ||||||||||||| ||||||||||| || ||||||||||||||||    
T  42774150 ggcgcggccaccccaaaaattgacgtggcgcggtatgcgggcgcg 42774194  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 285
Target Start/End: Original strand, 43265310 - 43265358
Alignment:
Q  238 cgcggccaccc-aaaaattgacgcggtgcggtatgcgggcgcgatgcgg 285  Q
    ||||||||||| ||||||||||||||  |||||||||||||||| ||||    
T  43265310 cgcggccaccccaaaaattgacgcggcacggtatgcgggcgcgacgcgg 43265358  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 28161137 - 28161064
Alignment:
Q  213 ctctgttatcaaagtggaaacacggcgcggccac-ccaaaaattgacgcggtgcggtatgcgggcgcgatgcgg 285  Q
    ||||||| |||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  28161137 ctctgttgtcaaagcggaaacgcggcgcggccacaccaaaaattgacgcggtgcggtatgcgggcgcgacgcgg 28161064  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 16899683 - 16899730
Alignment:
Q  233 cacggcgcggccaccc-aaaaattgacgcggtgcggtatgcgggcgcg 279  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  16899683 cacggcgtggccaccccaaaaattgacgcggtgcggtatgcgggcgcg 16899730  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 4101257 - 4101209
Alignment:
Q  238 cgcggccaccc-aaaaattgacgcggtgcggtatgcgggcgcgatgcgg 285  Q
    ||||||||||| |||||||||||||| |||||||| |||||||| ||||    
T  4101257 cgcggccaccccaaaaattgacgcggcgcggtatgtgggcgcgacgcgg 4101209  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 277
Target Start/End: Original strand, 48663334 - 48663374
Alignment:
Q  238 cgcggccaccc-aaaaattgacgcggtgcggtatgcgggcg 277  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  48663334 cgcggccaccccaaaaattgacgcggcgcggtatgcgggcg 48663374  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 238 - 297
Target Start/End: Complemental strand, 33672859 - 33672799
Alignment:
Q  238 cgcggccaccc-aaaaattgacgcggtgcggtatgcgggcgcgatgcggacactaatatat 297  Q
    ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| |||||    
T  33672859 cgcggccaccccaaaaattgacgcggcgcggtatgcgggcgcgacgcggacactattatat 33672799  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 6807667 - 6807616
Alignment:
Q  235 cggcgcggccaccc-aaaaattgacgcggtgcggtatgcgggcgcgatgcgg 285  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  6807667 cggcgcggccaccccaaaaattgacgcggtgcggtatgcgggcgcgacgcgg 6807616  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 285
Target Start/End: Complemental strand, 5320471 - 5320406
Alignment:
Q  221 tcaaagtggaaacacggcgcggccaccc-aaaaattgacgcggtgcggtatgcgggcgcgatgcgg 285  Q
    |||||| |||||| |||||||||||||| |||||||||||||| |||||||| |||||||| ||||    
T  5320471 tcaaagcggaaacgcggcgcggccaccccaaaaattgacgcggcgcggtatgtgggcgcgacgcgg 5320406  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 373
Target Start/End: Complemental strand, 6807500 - 6807463
Alignment:
Q  336 ttgaaataaaacatgtcttatgcaattacacatgccat 373  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6807500 ttgaaataaaacatgtcttatgcaattacacatgccat 6807463  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 38433124 - 38433073
Alignment:
Q  235 cggcgcggccaccc-aaaaattgacgcggtgcggtatgcgggcgcgatgcgg 285  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  38433124 cggcgcggccaccccaaaaattgacgcggtgcggtatgcgggcgcgacgcgg 38433073  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 1659378 - 1659330
Alignment:
Q  238 cgcggccaccc-aaaaattgacgcggtgcggtatgcgggcgcgatgcgg 285  Q
    ||||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  1659378 cgcggccaccccaaaaattgacgcggcgcggtatgcgggcgcgacgcgg 1659330  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 17105997 - 17105946
Alignment:
Q  235 cggcgcggccaccc-aaaaattgacgcggtgcggtatgcgggcgcgatgcgg 285  Q
    |||||||||||||| |||||||||||||| |||||||||||| |||| ||||    
T  17105997 cggcgcggccaccccaaaaattgacgcggcgcggtatgcgggtgcgacgcgg 17105946  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 234466 - 234534
Alignment:
Q  211 acctctgttatcaaagtggaaacacggcgcggcca-cccaaaaattgacgcggtgcggtatgcgggcgc 278  Q
    ||||||||| |||||| |||||  ||||||||||| ||||||||||||| |||  |||||||| |||||    
T  234466 acctctgttgtcaaagcggaaaagcggcgcggccaccccaaaaattgacacggcacggtatgcaggcgc 234534  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 213 - 303
Target Start/End: Original strand, 34499930 - 34500029
Alignment:
Q  213 ctctgttatcaaagtggaaacacggcgcggccaccc-aaaaattgacgcggtgcggtatgcgggcgcgat--------gcggacactaatatatttaata 303  Q
    ||||||| |||||| |||||  ||||||||| |||| |||||||||||||| ||||||||||||||||||        ||||||||||||||||||||||    
T  34499930 ctctgttgtcaaagcggaaaagcggcgcggcaaccccaaaaattgacgcggcgcggtatgcgggcgcgatttcataacgcggacactaatatatttaata 34500029  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 36828074 - 36828120
Alignment:
Q  235 cggcgcggccaccc-aaaaattgacgcggtgcggtatgcgggcgcga 280  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||    
T  36828074 cggcgcggccaccccaaaaattgacgcggcgcggtatgcgggcgcga 36828120  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 285
Target Start/End: Complemental strand, 37617802 - 37617737
Alignment:
Q  221 tcaaagtggaaacacggcgcggccaccc-aaaaattgacgcggtgcggtatgcgggcgcgatgcgg 285  Q
    |||||| |||||| ||||||| |||||| |||||||||||||| |||||||||||| |||| ||||    
T  37617802 tcaaagcggaaacgcggcgcgaccaccccaaaaattgacgcggcgcggtatgcgggtgcgacgcgg 37617737  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 38871238 - 38871311
Alignment:
Q  211 acctctgttatcaaagtggaaacacggcgcgg-----ccacc-caaaaattgacgcggtgcggtatgcgggcgc 278  Q
    |||||||||||||||| |||||| ||||||||     ||||| ||||||||||||||| |||||||||||||||    
T  38871238 acctctgttatcaaagcggaaacgcggcgcggtgcggccaccacaaaaattgacgcggcgcggtatgcgggcgc 38871311  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 4968730 - 4968682
Alignment:
Q  238 cgcggccaccc-aaaaattgacgcggtgcggtatgcgggcgcgatgcgg 285  Q
    ||||||||||| |||||||||||||| |||||||| |||||||| ||||    
T  4968730 cgcggccaccccaaaaattgacgcggcgcggtatgtgggcgcgacgcgg 4968682  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 38871334 - 38871366
Alignment:
Q  282 gcggacactaatatatttaatactataatgttg 314  Q
    ||||||||||||| |||||||||||||||||||    
T  38871334 gcggacactaataaatttaatactataatgttg 38871366  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 29947950 - 29947905
Alignment:
Q  235 cggcgcggccaccc-aaaaattgacgcggtgcggtatgcgggcgcg 279  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  29947950 cggcgcggccaccccaaaaattgacgcggtgcggtatgcgggcgcg 29947905  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 13763392 - 13763341
Alignment:
Q  235 cggcgcggccacc-caaaaattgacgcggtgcggtatgcgggcgcgatgcgg 285  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||| ||||    
T  13763392 cggcgcggccaccacaaaaattgacgcggcgcggtatgcgggcgcgacgcgg 13763341  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 29947777 - 29947743
Alignment:
Q  343 aaaacatgtcttatgcaattacacatgccataact 377  Q
    |||||||||||||||||||||||||||||||||||    
T  29947777 aaaacatgtcttatgcaattacacatgccataact 29947743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 303
Target Start/End: Original strand, 41055020 - 41055120
Alignment:
Q  213 ctctgttatcaaagtggaaacacggcgcggcca-cccaaaaattgacgcggtgcggtatgcgggcgc---------gatgcggacactaatatatttaat 302  Q
    ||||||| |||||| |||||  ||||||||||| ||||||||||||||||| ||||  |||||||||         ||||||||||||||||||||||||    
T  41055020 ctctgttgtcaaagcggaaatgcggcgcggccaccccaaaaattgacgcggcgcggagtgcgggcgctatttcggtgatgcggacactaatatatttaat 41055119  T
Q  303 a 303  Q
    |    
T  41055120 a 41055120  T

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Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 83900 - 83849
Alignment:
Q  235 cggcgcggccaccc-aaaaattgacgcggtgcggtatgcgggcgcgatgcgg 285  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  83900 cggcgcggccaccccaaaaattgacgcggcgcggtatgcgggcgcgacgcgg 83849  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 52398284 - 52398342
Alignment:
Q  221 tcaaagtggaaacacggcgcggccaccc-aaaaattgacgcggtgcggtatgcgggcgc 278  Q
    |||||| |||||  |||||||||||||| |||||||||||||| |||||||||||||||    
T  52398284 tcaaagcggaaaagcggcgcggccaccccaaaaattgacgcggcgcggtatgcgggcgc 52398342  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 126283 - 126238
Alignment:
Q  246 cccaaaaattgacgcggtgcggtatgcgggcgcgatgcggacacta 291  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||||||    
T  126283 cccaaaaattgacgcggcgcggtatgcgggcacgacgcggacacta 126238  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 285
Target Start/End: Original strand, 47974398 - 47974479
Alignment:
Q  210 tacctctgttatcaaagtggaaacacggcgcg-----gccaccc-aaaaattgacgcggtgcggtatgcgggcgcgatgcgg 285  Q
    |||||||||| |||||| |||||| |||||||     ||||||| |||||||||||||| ||||||||||||||||| ||||    
T  47974398 tacctctgttgtcaaagcggaaacgcggcgcgacacggccaccccaaaaattgacgcggcgcggtatgcgggcgcgacgcgg 47974479  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 23893340 - 23893402
Alignment:
Q  216 tgttatcaaagtggaaacacggcgcggccacccaaaaattgacgcggtgcggtatgcgggcgc 278  Q
    |||| |||||| ||||||  || ||||||||||||||||||||| ||  ||||||||||||||    
T  23893340 tgttgtcaaagcggaaacgtggtgcggccacccaaaaattgacgtggcacggtatgcgggcgc 23893402  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 24766464 - 24766424
Alignment:
Q  238 cgcggccaccc-aaaaattgacgcggtgcggtatgcgggcg 277  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  24766464 cgcggccaccccaaaaattgacgcggcgcggtatgcgggcg 24766424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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