View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1077_high_13 (Length: 425)

Name: NF1077_high_13
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1077_high_13
NF1077_high_13
[»] chr8 (9 HSPs)
chr8 (44-372)||(18668979-18669302)
chr8 (203-396)||(13116127-13116314)
chr8 (44-197)||(13117759-13117913)
chr8 (44-126)||(13135567-13135649)
chr8 (43-120)||(13009786-13009863)
chr8 (45-125)||(13011028-13011108)
chr8 (46-120)||(9577687-9577761)
chr8 (44-120)||(26442007-26442083)
chr8 (53-113)||(11537262-11537322)
[»] chr7 (5 HSPs)
chr7 (44-119)||(41866260-41866335)
chr7 (45-120)||(28261753-28261828)
chr7 (46-120)||(48918555-48918629)
chr7 (53-113)||(31656835-31656895)
chr7 (53-113)||(29218221-29218281)
[»] chr5 (3 HSPs)
chr5 (46-119)||(15369476-15369549)
chr5 (46-119)||(16946302-16946375)
chr5 (45-113)||(19732067-19732135)
[»] chr2 (2 HSPs)
chr2 (45-125)||(2388802-2388882)
chr2 (53-113)||(35514112-35514171)
[»] scaffold0971 (1 HSPs)
scaffold0971 (45-120)||(1335-1410)
[»] chr6 (2 HSPs)
chr6 (44-119)||(29022863-29022938)
chr6 (300-353)||(16976267-16976321)
[»] chr4 (6 HSPs)
chr4 (45-120)||(23458688-23458763)
chr4 (46-121)||(56435055-56435130)
chr4 (46-120)||(56191433-56191507)
chr4 (46-119)||(42636393-42636466)
chr4 (53-113)||(20916804-20916863)
chr4 (54-113)||(31032755-31032813)
[»] chr1 (1 HSPs)
chr1 (46-119)||(45764995-45765068)
[»] scaffold0899 (1 HSPs)
scaffold0899 (46-120)||(2452-2526)
[»] chr3 (2 HSPs)
chr3 (53-113)||(26379277-26379336)
chr3 (53-113)||(29383688-29383747)


Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 44 - 372
Target Start/End: Original strand, 18668979 - 18669302
Alignment:
Q  44 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaaccacttgtgtcaaattttaaaactgt 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18668979 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccacttgagtcaaattttaaaactgt 18669078  T
Q  144 ttgtatttgttcgctgtaaaaatgaaattaggcctaaatagaagttcagtaatatcatgcacactaccacatcagatttatttctattattatccataga 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18669079 ttgtatttgttcgctgtaaaaatgaaattaggcctaaatagaagttcagtaatatcatgcacactaccacataagatttatttctattattatccataga 18669178  T
Q  244 ttattatagagaattacaagttttatcattctctgaccgtttgtttgataaataaacatagagatgctttcatatacaacatatttgagctttggaatgt 343  Q
    ||||||||||||||||||||||||||||||||||||||    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  18669179 ttattatagagaattacaagttttatcattctctgacc----gtttgataaat-aacataaagatgctttcatatacaacatatttgagctttggaatgt 18669273  T
Q  344 tcccactccatatgctcaacttgtcttat 372  Q
    |||||||||||||||||||||||||||||    
T  18669274 tcccactccatatgctcaacttgtcttat 18669302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 203 - 396
Target Start/End: Complemental strand, 13116314 - 13116127
Alignment:
Q  203 cacactaccacatcagatttatttctattattatccatagattattatagagaattacaagttttatcattctctgaccgtttgtttgataaataaacat 302  Q
    |||||||||||||| ||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| | || ||||||     |||||||| |||    
T  13116314 cacactaccacatccgatttatttatattattatcaatagaatattatagagaattacaagttttatcattatgtggccgtttt----ataaataa-cat 13116220  T
Q  303 agagatgctttcatatacaacatatttgagctttggaatgttcccactccatatgctcaacttgtcttatcccttccacatcaaatgaaaaata 396  Q
    ||||||||||| || |||| ||| ||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||| |||||||    
T  13116219 agagatgctttaatgtacaccat-tttgagctttggaatgttccctctgcatatgctcaatttgtcttatcccttccatatcaaatcaaaaata 13116127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 44 - 197
Target Start/End: Complemental strand, 13117913 - 13117759
Alignment:
Q  44 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaaccacttgtgtca-aattttaaaactg 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||| | | || ||| | |||     
T  13117913 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccctttgtattagaagttttacactt 13117814  T
Q  143 tttgtatttgttcgctgtaaaaatgaaattaggcctaaatagaagttcagtaata 197  Q
    |   ||||| ||||||||| |||||| ||||||||||||||||||||||||||||    
T  13117813 tggatatttattcgctgtataaatgagattaggcctaaatagaagttcagtaata 13117759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 13135649 - 13135567
Alignment:
Q  44 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaaccacttgtg 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  13135649 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccatttgtg 13135567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 13009786 - 13009863
Alignment:
Q  43 caatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaacca 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  13009786 caatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtaataaccaactacaccacgaaacca 13009863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 13011028 - 13011108
Alignment:
Q  45 atggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaaccacttgt 125  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  13011028 atggcttcgcccaggtttgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccatttgt 13011108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 9577761 - 9577687
Alignment:
Q  46 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaacca 120  Q
    |||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9577761 tggcttcgcccaggtttgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 9577687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 26442007 - 26442083
Alignment:
Q  44 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaacca 120  Q
    ||||||||||||| || |||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26442007 aatggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 26442083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 11537322 - 11537262
Alignment:
Q  53 gcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccac 113  Q
    ||||||| |||||||||||||||  ||||||| |||||   ||||||||| ||||||||||    
T  11537322 gcccaggttcgaactggggacctctagtgtgtgagactagcgtgataaccgactacaccac 11537262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 41866260 - 41866335
Alignment:
Q  44 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaacc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41866260 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 41866335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 28261753 - 28261828
Alignment:
Q  45 atggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaacca 120  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28261753 atggcttcgcccaggctagaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 28261828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 48918555 - 48918629
Alignment:
Q  46 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaacca 120  Q
    ||||||||||| || |||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48918555 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 48918629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 31656835 - 31656895
Alignment:
Q  53 gcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccac 113  Q
    ||||||| |||||||||||||||| ||||||| ||||| | ||||||||||||||||||||    
T  31656835 gcccaggttcgaactggggacctttagtgtgtgagactaacgtgataaccaactacaccac 31656895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 29218221 - 29218281
Alignment:
Q  53 gcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccac 113  Q
    ||||||| |||||||||||||||  ||||||| |||||   ||||||||||||||||||||    
T  29218221 gcccaggttcgaactggggacctctagtgtgtgagactagcgtgataaccaactacaccac 29218281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 15369549 - 15369476
Alignment:
Q  46 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaacc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15369549 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 15369476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 16946302 - 16946375
Alignment:
Q  46 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaacc 119  Q
    ||||||||||| | ||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16946302 tggcttcgcccggactcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 16946375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 19732067 - 19732135
Alignment:
Q  45 atggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccac 113  Q
    ||||| |||||| | || |||| || |||||||||||||||||||||| ||||||||||||||||||||    
T  19732067 atggcgtcgcccggacttgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 19732135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 2388882 - 2388802
Alignment:
Q  45 atggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaaccacttgt 125  Q
    |||||||||||| || |||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  2388882 atggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccatttgt 2388802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 35514171 - 35514112
Alignment:
Q  53 gcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccac 113  Q
    ||||||| ||||||||| |||||||||||||| ||||||| ||||||||| ||||||||||    
T  35514171 gcccaggatcgaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 35514112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0971 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0971
Description:

Target: scaffold0971; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 1335 - 1410
Alignment:
Q  45 atggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaacca 120  Q
    |||||||||||| || |||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1335 atggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 1410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 29022938 - 29022863
Alignment:
Q  44 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaacc 119  Q
    ||||||||||||| || |||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29022938 aatggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 29022863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 16976267 - 16976321
Alignment:
Q  300 catagagatgctttcatatacaacatatttgagctttggaatg-ttcccactcca 353  Q
    |||| |||||||||||||||||||||||||||| |||| |||| |||||||||||    
T  16976267 catacagatgctttcatatacaacatatttgagatttgaaatgattcccactcca 16976321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 23458688 - 23458763
Alignment:
Q  45 atggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaacca 120  Q
    |||||||||||| || |||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23458688 atggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 23458763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 56435130 - 56435055
Alignment:
Q  46 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaaccac 121  Q
    ||||||||||| || |||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  56435130 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccac 56435055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 56191433 - 56191507
Alignment:
Q  46 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaacca 120  Q
    ||||||||||| || |||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  56191433 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 56191507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 42636466 - 42636393
Alignment:
Q  46 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaacc 119  Q
    ||||||||||| || |||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42636466 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 42636393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 20916804 - 20916863
Alignment:
Q  53 gcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccac 113  Q
    ||||||| ||||||||| |||||||||||||| ||||||| ||||||||| ||||||||||    
T  20916804 gcccaggatcgaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 20916863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 31032813 - 31032755
Alignment:
Q  54 cccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccac 113  Q
    |||||| ||||||||| |||||||||||||| ||||||| ||||||||| ||||||||||    
T  31032813 cccaggatcgaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 31032755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 45764995 - 45765068
Alignment:
Q  46 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaacc 119  Q
    ||||||||||| || |||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45764995 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 45765068  T

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Target: scaffold0899 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0899
Description:

Target: scaffold0899; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 2526 - 2452
Alignment:
Q  46 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccacgaaacca 120  Q
    ||||||||||| || || |||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  2526 tggcttcgccctggttcaaactggagaccttcagtgtgttagactgacgtgataaccaactacaccactaaacca 2452  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 26379277 - 26379336
Alignment:
Q  53 gcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccac 113  Q
    ||||||| ||||||||| |||||||||||||| ||||||| ||||||||| ||||||||||    
T  26379277 gcccaggatcgaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 26379336  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 29383747 - 29383688
Alignment:
Q  53 gcccaggctcgaactggggaccttcagtgtgttagactgatgtgataaccaactacaccac 113  Q
    ||||||| ||||||||| |||||||||||||| ||||||| ||||||||| ||||||||||    
T  29383747 gcccaggatcgaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 29383688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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