View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_high_16 (Length: 422)
Name: NF1077_high_16
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 144 - 337
Target Start/End: Original strand, 37074559 - 37074741
Alignment:
| Q |
144 |
ccatatgcaaacacaaatgattttatcttcaatccattgttagtaagaatcaatttttcaaaatcatctcactttaaaataaatttttgttgctgcagaa |
243 |
Q |
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| T |
37074559 |
ccatatgcaaacacaaatgattttatcttcaatccattgttagtaagaatcaatttttcaaaatcatctcactttaaaataaatttttgttgctgcagaa |
37074658 |
T |
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| Q |
244 |
ttagacatacactaagatcatcttcaaagggatcttataagggatcttataagacccgaggtctcacttaccttcaatcttaagtgagacacac |
337 |
Q |
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| T |
37074659 |
ttagacatacactaagaccatcttcaa-----------aaggggtcttataagacccgagttctcacttaccttcaatcttaagtgagacacac |
37074741 |
T |
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Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 37074420 - 37074507
Alignment:
| Q |
1 |
tgtccacgatcacaagatataatacaattagagtgaatatatgaaacaaattaacaatgatttgattcttattaaaactatgatatgt |
88 |
Q |
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| T |
37074420 |
tgtccacgatcacaagatataatacaattagagtgaatatatgaaataaattaaccatgatttgattcttattaaaactatgatatgt |
37074507 |
T |
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