View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_high_17 (Length: 418)
Name: NF1077_high_17
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 4765242 - 4764912
Alignment:
| Q |
1 |
aaccaataactgaacaacaaattataaattgtaacgaacgttgactctttcaatgaatttttcctcatgccttgcacgagttcacggtactagtattgta |
100 |
Q |
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| T |
4765242 |
aaccaataactgaacaacaaattataatttgtaacgaacgttgactctttcaatgaatttttcctcatgccttgcacgagttcacggtactagtattgta |
4765143 |
T |
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| Q |
101 |
gaatataattatttttaaaaaattaccgaaagtaaagaagcaagtgttggaaaactctgagttgatgagtacttttatacaactgattacaaatgcatcc |
200 |
Q |
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| T |
4765142 |
gaatataattatttttaaaaaattaccgaaagtaaagaagaaagtgttggaaaactctgagttgatgagtacttttatacaactgattacaaatgcatcc |
4765043 |
T |
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| Q |
201 |
ttatttattacacataataaataacctgctgtggtatatcagaattggctactgcataacctgcaatatttacaatgggaaaaggtggtaatt-ttttct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
4765042 |
ttatttattacacataataaataacctgctgtggtatatcagaattggctactgcataacctgcaatatttacagtgggaaaaggtggtaatttttttct |
4764943 |
T |
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| Q |
300 |
aaattaagttaaaatgaactatatgatgatg |
330 |
Q |
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| T |
4764942 |
aaattaagttaaaatgaactatatgatgatg |
4764912 |
T |
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