View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_high_19 (Length: 399)
Name: NF1077_high_19
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_high_19 |
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| [»] scaffold0296 (1 HSPs) |
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| [»] scaffold0631 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 10 - 370
Target Start/End: Original strand, 44583274 - 44583634
Alignment:
| Q |
10 |
aagaatatactcaattgatgtcaaccatgacttcagaacaaaggaaaatatatgacaagataatgacacgggtcattgaaaataaacccggattattttt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44583274 |
aagaatatactcaattgatgtcaaccatgacttcagaacaaaggaaaatatatgacaagataatgacacgggtcattgaaaataaacccggattattttt |
44583373 |
T |
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| Q |
110 |
tcttcatggctacgggggcacaggaaagacttatatttggagggctatgtcagctgcattacgctcaaaaggagatattgttctaacagttgcatccagt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44583374 |
tcttcatggctacgggggcacaggaaagacttatatttggagggctatgtcagctgcattacgctcaaaaggagatattgttctaacagttgcatccagt |
44583473 |
T |
|
| Q |
210 |
ggaatagctgctttgttgattcctggaggaagaactgcacattcaaggttttccattcctatacatgttgatgaaaactcaacctgcaatattacgcaag |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44583474 |
ggaatagctgctttgttgattcctggaggaagaactgcacattcaaggttttccattcctatacatgttgatgaaaactcaacctgcaatattacgtaag |
44583573 |
T |
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| Q |
310 |
gaagccccttagctgaattaatagtcaaggcaaaactcatcatttgggatgaggctccaat |
370 |
Q |
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| T |
44583574 |
gaagccccttagctgaattaatagtcaaggcaaaactcatcatttgggatgaggctccaat |
44583634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0296 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: scaffold0296
Description:
Target: scaffold0296; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 96 - 370
Target Start/End: Complemental strand, 2187 - 1910
Alignment:
| Q |
96 |
cccggattattttttcttcatggctacgggggcacaggaaagacttatatttggagggctatgtcagctgcattacgctcaaaagga-gatattgttcta |
194 |
Q |
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|||||||| ||||||||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| | || |
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| T |
2187 |
cccggatttttttttcttcatgcttccgggggcccaggaaagacttatatttggagggttatgtcagctgcattacgctcaaaaagaagatattggttta |
2088 |
T |
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| Q |
195 |
acagttgcatccagtggaatagctgctttgttgattcctggaggaa-gaactgcacattcaaggttttccatt-cctatacatgttgatgaaaactcaac |
292 |
Q |
| |
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||||||||||||||||||||||||||| || |||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
2087 |
ccagttgcatccagtggaatagctgctt-gtgatttccctgaggaaagaactgcacattcaaggttttccatttcctatacatgttgatgaaaactca-c |
1990 |
T |
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| Q |
293 |
ctgcaa-tattacgcaaggaagccccttagctgaattaatagtcaaggcaaaactcatca-tttgggatgaggctccaat |
370 |
Q |
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| T |
1989 |
ctgcaaatattacgtaaggaagccccttagctgaattaatagtcaaggcaaaactcatcattttgggatgaggctccaat |
1910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 85 - 281
Target Start/End: Complemental strand, 41532992 - 41532796
Alignment:
| Q |
85 |
ttgaaaataaacccggattattttttcttcatggctacgggggcacaggaaagacttatatttggagggctatgtcagctgcattacgctcaaaaggaga |
184 |
Q |
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||||||| ||||||| ||||||||||| |||| || || |||||||| ||||||| ||||||||||||||||||||| ||||| | |||||||| | |
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| T |
41532992 |
ttgaaaacaaacccgacatattttttctttatggttatggaggcacagggaagacttttatttggagggctatgtcagcagcattgagatcaaaaggtca |
41532893 |
T |
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| Q |
185 |
tattgttctaacagttgcatccagtggaatagctgctttgttgattcctggaggaagaactgcacattcaaggttttccattcctatacatgttgat |
281 |
Q |
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||||| |||| ||||| || ||||| |||||||| | | ||||| ||||||||||||||||| ||||||||| | ||||||||| || ||||| |
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| T |
41532892 |
aattgtcttaactgttgcttcaagtgggatagctgcactactcattccaggaggaagaactgcacactcaaggtttgctattcctataaatattgat |
41532796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 34418320 - 34418167
Alignment:
| Q |
103 |
tattttttcttcatggctacgggggcacaggaaagacttatatttggagggctatgtcagctgcattacgctcaaaaggagatattgttctaacagttgc |
202 |
Q |
| |
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||||||||||| |||| ||||| |||||||| || || | | | |||||||||||| |||||||||| | ||| |||| || |||||| ||| |||||| |
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| T |
34418320 |
tattttttctttatggttacggtggcacagggaaaacatttttatggagggctatggcagctgcattgagatcacaaggtgagattgttttaatagttgc |
34418221 |
T |
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| Q |
203 |
atccagtggaatagctgctttgttgattcctggaggaagaactgcacattcaag |
256 |
Q |
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||||||||| |||||||| || | || |||||||| ||||| ||||||||||| |
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| T |
34418220 |
atccagtggcatagctgcgttactcatacctggaggcagaaccgcacattcaag |
34418167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0631 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0631
Description:
Target: scaffold0631; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 5761 - 5659
Alignment:
| Q |
115 |
atggctacgggggcacaggaaagacttatatttggagggctatgtcagctgcattacgctcaaaaggagatattgttctaacagttgcatccagtggaat |
214 |
Q |
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|||| ||||| || |||||||| |||| ||||||||| ||||||||| ||||||| | || |||||| | |||||||||||||| || || ||||| || |
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| T |
5761 |
atgggtacggtggtacaggaaaaacttttatttggagagctatgtcatctgcattgagatccaaaggacaaattgttctaacagtagcgtcaagtggtat |
5662 |
T |
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| Q |
215 |
agc |
217 |
Q |
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||| |
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| T |
5661 |
agc |
5659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 25613373 - 25613426
Alignment:
| Q |
219 |
gctttgttgattcctggaggaagaactgcacattcaaggttttccattcctata |
272 |
Q |
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|||||| | ||||||||||| ||||||||||||||| ||||| |||||||||| |
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| T |
25613373 |
gctttgctcattcctggaggtagaactgcacattcacggtttaacattcctata |
25613426 |
T |
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