View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_high_23 (Length: 367)
Name: NF1077_high_23
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 9 - 359
Target Start/End: Complemental strand, 780555 - 780205
Alignment:
| Q |
9 |
agcagagacatcacaaaaacttcaaacaaactaaaaattacagattgaaagataaaaggaacgatcaatttagaaaaataacacaaatatatgtcgcagg |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
780555 |
agcacagacatcacaaaaacttcaaacaaactaaaaattacagattgaaagataaaaggaacgatcaatttc-aaaaataacacaaatatatgtcgcagg |
780457 |
T |
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| Q |
109 |
taagatttatcttttgatagtaactccgaatatataactgagtaaaagcttacatcaataattggtggctgccctttgagtccaacttttagatgattct |
208 |
Q |
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| T |
780456 |
taagatttatcttttgatagtaactgcgaatatataactgagtaaaagcttacatcaataattggtggctgccctttgagtccaacttttagatgattct |
780357 |
T |
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| Q |
209 |
tctttatctcacagatgacaaatcctgattttgttccatttggcaccggaacattcacattgagctcttgcaaagtttgagtccaggaatatttcgccag |
308 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
780356 |
tctttatctcacagatgacaaaccctgattttgttccatttggcaccggaacattcacattgagctcttgcaaagtttgagtccaggaatatttctccag |
780257 |
T |
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| Q |
309 |
atccatgccattaccatgatttggag-tgtccattataaagaacaaaggtgt |
359 |
Q |
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| T |
780256 |
atccatgccattaccttgatttggagctgtccattataaagaacaaaggtgt |
780205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 141 - 352
Target Start/End: Original strand, 770921 - 771133
Alignment:
| Q |
141 |
tataactgagtaaaagcttacatcaataattggtggctgccctttgagtccaacttttagatgattcttctttatctcacagatgacaaatcctgatttt |
240 |
Q |
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| T |
770921 |
tataactgagtaaatgcttacatcaataattggtggctgccctttgagtccaacttttagatggttcttcttaatctcacagatgacaaaccctgatttt |
771020 |
T |
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| Q |
241 |
gttccatttggcaccggaacattcacattgagctcttgcaaagtttgagtccaggaatatttcgccagatccatgccattaccatgatttggag-tgtcc |
339 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| ||| |||||| |||||||| |||||||| | ||||| |
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| T |
771021 |
gttccatttggcactggaacattcacattcagctcttgcaaagtttgagtccaggaatacttctccaaatccataccattaccctgatttggtgctgtcc |
771120 |
T |
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| Q |
340 |
attataaagaaca |
352 |
Q |
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|||||||| |||| |
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| T |
771121 |
attataaaaaaca |
771133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 150 - 355
Target Start/End: Complemental strand, 785110 - 784904
Alignment:
| Q |
150 |
gtaaaagcttacatcaataattggtggctgccctttgagtccaacttttagatgattcttctttatctcacagatgacaaatcctgattttgttccattt |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||| | |||||||||||| ||| |
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| T |
785110 |
gtaaaagcttacatcaataattggtggctgccctttgattccaacttttagatggttcttctttatctcacatgtgacaaaccttgattttgttccgttt |
785011 |
T |
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| Q |
250 |
ggcaccggaacattcacattgagctcttgcaaagtttgagtccaggaatatttcgccagatccatgccattaccatgatttggag-tgtccattataaag |
348 |
Q |
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| T |
785010 |
ggcactggaacattcacattgagctcttgaagagtttgagtccaagaatatttctccagatccataccattaccctgattgggagctgtcaattaaaaag |
784911 |
T |
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| Q |
349 |
aacaaag |
355 |
Q |
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| T |
784910 |
agcaaag |
784904 |
T |
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