View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1077_high_25 (Length: 367)

Name: NF1077_high_25
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1077_high_25
NF1077_high_25
[»] chr5 (11 HSPs)
chr5 (32-362)||(7633590-7633922)
chr5 (1-41)||(7732848-7732888)
chr5 (1-42)||(25994943-25994984)
chr5 (2-40)||(7633528-7633566)
chr5 (2-48)||(14410252-14410298)
chr5 (3-40)||(15106398-15106435)
chr5 (1-42)||(25868121-25868162)
chr5 (1-42)||(25868504-25868545)
chr5 (1-42)||(25994559-25994600)
chr5 (1-49)||(6408655-6408702)
chr5 (6-46)||(7826053-7826093)
[»] chr1 (5 HSPs)
chr1 (72-362)||(42146688-42146984)
chr1 (1-42)||(37920147-37920188)
chr1 (1-42)||(52690198-52690239)
chr1 (1-41)||(37919723-37919763)
chr1 (7-39)||(46190843-46190875)
[»] chr6 (3 HSPs)
chr6 (28-258)||(1860450-1860696)
chr6 (1-42)||(1860391-1860432)
chr6 (1-43)||(31778842-31778884)
[»] chr4 (2 HSPs)
chr4 (1-47)||(40361672-40361718)
chr4 (8-47)||(38677587-38677626)
[»] chr2 (7 HSPs)
chr2 (1-42)||(19004821-19004862)
chr2 (5-42)||(37940145-37940182)
chr2 (1-43)||(33710907-33710949)
chr2 (1-42)||(42807480-42807521)
chr2 (1-42)||(42808588-42808629)
chr2 (13-41)||(14913435-14913463)
chr2 (1-49)||(44158311-44158359)
[»] chr8 (8 HSPs)
chr8 (10-42)||(36701347-36701379)
chr8 (3-42)||(7130616-7130655)
chr8 (4-42)||(42432043-42432081)
chr8 (1-43)||(45156030-45156072)
chr8 (2-43)||(7130146-7130187)
chr8 (1-42)||(13461203-13461244)
chr8 (3-44)||(41720967-41721008)
chr8 (6-42)||(33220700-33220736)
[»] chr7 (1 HSPs)
chr7 (1-42)||(42629201-42629242)
[»] scaffold1107 (1 HSPs)
scaffold1107 (4-48)||(1915-1959)


Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 32 - 362
Target Start/End: Original strand, 7633590 - 7633922
Alignment:
Q  32 ttaactcacgctagtttacatatcatatggttttctgttctcttacatagaggatcatcatgaactca--gagaatggtgcatttagcgctggctctggc 129  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||  |||||||||||||||||  |||||||||||    
T  7633590 ttaactcacgctagtttacatatcatatggttttctgttatcttacatagaagatcatcaggaactcaaagagaatggtgcatttagtactggctctggc 7633689  T
Q  130 aaccacaattgatcacgactcaacacatggacccaattcatgctcattagatgcctacatatctaactatgctacaataaaagacaagaaaatctcaaga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7633690 aaccacaattgatcacgactcaacacatggacccaattcatgctcattagatgcctacatatccaactatgctacaataaaagacaagaaaatctcaaga 7633789  T
Q  230 attttaaacatgaatacgacccattagattttttatgctatgaaaagtcaatttgttgttccattcataaacaataagaatcattattattatttttggg 329  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7633790 attttaaacatgaatacgacccattagatttttcatgctatgaaaagtcaatttgttgttccattcataaacaataagaatcattattattatttttggg 7633889  T
Q  330 atactttattaccactcgttatttcatctcact 362  Q
    |||||||||||||||||||||||||||||||||    
T  7633890 atactttattaccactcgttatttcatctcact 7633922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7732888 - 7732848
Alignment:
Q  1 cacatgcgtgacttaagtcacgcaacatgagttaactcacg 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  7732888 cacatgcgtgacttaagtcacgccacatgagttaactcacg 7732848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25994984 - 25994943
Alignment:
Q  1 cacatgcgtgacttaagtcacgcaacatgagttaactcacgc 42  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  25994984 cacatgcgtgacttaagtcacgctgcatgagttaactcacgc 25994943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 7633528 - 7633566
Alignment:
Q  2 acatgcgtgacttaagtcacgcaacatgagttaactcac 40  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  7633528 acatacgtgacttaagtcacgcagcatgagttaactcac 7633566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 14410252 - 14410298
Alignment:
Q  2 acatgcgtgacttaagtcacgcaacatgagttaactcacgctagttt 48  Q
    ||||||||||||||||||||||  | ||||||||||||||| |||||    
T  14410252 acatgcgtgacttaagtcacgctgcgtgagttaactcacgcaagttt 14410298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 15106435 - 15106398
Alignment:
Q  3 catgcgtgacttaagtcacgcaacatgagttaactcac 40  Q
    |||||||||||||||||||| | |||||||||||||||    
T  15106435 catgcgtgacttaagtcacggagcatgagttaactcac 15106398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25868121 - 25868162
Alignment:
Q  1 cacatgcgtgacttaagtcacgcaacatgagttaactcacgc 42  Q
    |||||| ||||||||||||||||  |||||||||||||||||    
T  25868121 cacatgtgtgacttaagtcacgctgcatgagttaactcacgc 25868162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25868545 - 25868504
Alignment:
Q  1 cacatgcgtgacttaagtcacgcaacatgagttaactcacgc 42  Q
    |||||||||||||||||||||||  ||| |||||||||||||    
T  25868545 cacatgcgtgacttaagtcacgctgcataagttaactcacgc 25868504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25994559 - 25994600
Alignment:
Q  1 cacatgcgtgacttaagtcacgcaacatgagttaactcacgc 42  Q
    |||||||||||||||||||||||  | |||||||||||||||    
T  25994559 cacatgcgtgacttaagtcacgccgcctgagttaactcacgc 25994600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6408655 - 6408702
Alignment:
Q  1 cacatgcgtgacttaagtcacgcaacatgagttaactcacgctagttta 49  Q
    |||||||||||||||||||||||  ||| |||||||||| |||||||||    
T  6408655 cacatgcgtgacttaagtcacgctgcat-agttaactcaagctagttta 6408702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 7826053 - 7826093
Alignment:
Q  6 gcgtgacttaagtcacgcaacatgagttaactcacgctagt 46  Q
    |||||| |||| || ||||||||||||||||||||||||||    
T  7826053 gcgtgagttaactcccgcaacatgagttaactcacgctagt 7826093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 166; Significance: 9e-89; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 72 - 362
Target Start/End: Complemental strand, 42146984 - 42146688
Alignment:
Q  72 tcttacatagaggatcatcatgaactca--gagaatggtg-catttagcgctggctctggcaaccacaattgatcacgactcaacacatggacccaattc 168  Q
    ||||||||||| |||||||| |||||||  |||||||||| ||||||    |||||||||||| ||||||||| || |||||||||||||||||||||||    
T  42146984 tcttacatagaagatcatcaggaactcaaagagaatggtggcatttaatattggctctggcaaacacaattgagcatgactcaacacatggacccaattc 42146885  T
Q  169 atgctcattagatgcctacatatctaactatgctacaataaaagacaa-gaaaatctcaagaattttaaacatgaatacgacccattagattt-tttatg 266  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||| |||||     
T  42146884 atgctcattagatgcctacatagctaacaatgctacaataaaagacaacaaaaatctcaagaattttaaacatgaatacgaccctttagatttatttata 42146785  T
Q  267 ctatgaaaagtcaatttgttgttccattcataaacaataagaatcatta-ttattatttttgggatactttattaccactcgttatttcatctcact 362  Q
    || ||||||||||||||| ||||||||||||||| ||||| |||||||| ||||||||||||||||| |||| |||||||| ||||||||| |||||    
T  42146784 ctgtgaaaagtcaatttgctgttccattcataaataataaaaatcattatttattatttttgggatattttactaccactcattatttcatatcact 42146688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37920188 - 37920147
Alignment:
Q  1 cacatgcgtgacttaagtcacgcaacatgagttaactcacgc 42  Q
    |||||||||||||||| ||||||||| |||||||||||||||    
T  37920188 cacatgcgtgacttaaatcacgcaacgtgagttaactcacgc 37920147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 52690239 - 52690198
Alignment:
Q  1 cacatgcgtgacttaagtcacgcaacatgagttaactcacgc 42  Q
    |||||| |||||||||||||||  ||||||||||||||||||    
T  52690239 cacatgtgtgacttaagtcacgtcacatgagttaactcacgc 52690198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 37919723 - 37919763
Alignment:
Q  1 cacatgcgtgacttaagtcacgcaacatgagttaactcacg 41  Q
    |||||||||||||||||||| |||||||| ||||| |||||    
T  37919723 cacatgcgtgacttaagtcatgcaacatgggttaattcacg 37919763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 46190875 - 46190843
Alignment:
Q  7 cgtgacttaagtcacgcaacatgagttaactca 39  Q
    ||||||||||||||| |||||||||||||||||    
T  46190875 cgtgacttaagtcacacaacatgagttaactca 46190843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 28 - 258
Target Start/End: Original strand, 1860450 - 1860696
Alignment:
Q  28 tgagttaactcacgctagtttacatatcatatggttttctgttc-------------tcttacatagaggatcatcatgaactca--gagaatggtg-ca 111  Q
    ||||||||||||||||||||||||||||||||   |||||||||             |||||| |||| |||||||| |||||||  |||||||||| ||    
T  1860450 tgagttaactcacgctagtttacatatcatataactttctgttcgttacagacagagtcttacgtagaagatcatcaggaactcaaagagaatggtggca 1860549  T
Q  112 tttagcgctggctctggcaaccacaattgatcacgactcaacacatggacccaattcatgctcattagatgcctacatatctaactatgctacaataaaa 211  Q
    ||||    |||| |||||||||||| | |||| |||||||||   |||||||||||||||||||||||||||||||||| ||||| || |||||||||||    
T  1860550 tttaatattggcactggcaaccacagtcgatcgcgactcaaccattggacccaattcatgctcattagatgcctacatagctaacaatcctacaataaaa 1860649  T
Q  212 gacaagaaaatctcaagaattttaaacatgaatacgacccattagat 258  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||    
T  1860650 gacaacaaaatctcaagaattttaaacatgaatacgactcattagat 1860696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1860391 - 1860432
Alignment:
Q  1 cacatgcgtgacttaagtcacgcaacatgagttaactcacgc 42  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  1860391 cacatgcgtgacttaagtcacgcaacataagttaactcacgc 1860432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 31778842 - 31778884
Alignment:
Q  1 cacatgcgtgacttaagtcacgcaacatgagttaactcacgct 43  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  31778842 cacatgcgtgacttaagtcacgccgcatgagttaactcacgct 31778884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 40361718 - 40361672
Alignment:
Q  1 cacatgcgtgacttaagtcacgcaacatgagttaactcacgctagtt 47  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||    
T  40361718 cacatgcgtgacttaagtcacgccacgtgagttaactcacgctagtt 40361672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 38677626 - 38677587
Alignment:
Q  8 gtgacttaagtcacgcaacatgagttaactcacgctagtt 47  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  38677626 gtgacttaagtcacgcaacgtgagttaactcacgttagtt 38677587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19004821 - 19004862
Alignment:
Q  1 cacatgcgtgacttaagtcacgcaacatgagttaactcacgc 42  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  19004821 cacatgcgtgacttaagtcacgccgcatgagttaactcacgc 19004862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 37940182 - 37940145
Alignment:
Q  5 tgcgtgacttaagtcacgcaacatgagttaactcacgc 42  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  37940182 tgcgtgacttaagtcacgctacatgagttaactcacgc 37940145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 33710907 - 33710949
Alignment:
Q  1 cacatgcgtgacttaagtcacgcaacatgagttaactcacgct 43  Q
    |||||||||||||||||||||||  | ||||||||||||||||    
T  33710907 cacatgcgtgacttaagtcacgctgcgtgagttaactcacgct 33710949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42807480 - 42807521
Alignment:
Q  1 cacatgcgtgacttaagtcacgcaacatgagttaactcacgc 42  Q
    ||||| |||||||||||||||||  |||||||||||||||||    
T  42807480 cacatacgtgacttaagtcacgccgcatgagttaactcacgc 42807521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42808629 - 42808588
Alignment:
Q  1 cacatgcgtgacttaagtcacgcaacatgagttaactcacgc 42  Q
    |||||||||||||||||||||||| ||| |||||||| ||||    
T  42808629 cacatgcgtgacttaagtcacgcagcattagttaactgacgc 42808588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 14913435 - 14913463
Alignment:
Q  13 ttaagtcacgcaacatgagttaactcacg 41  Q
    |||||||||||||||||||||||||||||    
T  14913435 ttaagtcacgcaacatgagttaactcacg 14913463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44158311 - 44158359
Alignment:
Q  1 cacatgcgtgacttaagtcacgcaacatgagttaactcacgctagttta 49  Q
    |||||| | ||||||||| ||||  ||||||||||||||||||||||||    
T  44158311 cacatgtgcgacttaagttacgccgcatgagttaactcacgctagttta 44158359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 36701347 - 36701379
Alignment:
Q  10 gacttaagtcacgcaacatgagttaactcacgc 42  Q
    |||||||||||||||||||||||||||||||||    
T  36701347 gacttaagtcacgcaacatgagttaactcacgc 36701379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 7130655 - 7130616
Alignment:
Q  3 catgcgtgacttaagtcacgcaacatgagttaactcacgc 42  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  7130655 catgcgtgacttaagtcacgctgcatgagttaactcacgc 7130616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 42432081 - 42432043
Alignment:
Q  4 atgcgtgacttaagtcacgcaacatgagttaactcacgc 42  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  42432081 atgcgtgatttaagtcacgctacatgagttaactcacgc 42432043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 45156030 - 45156072
Alignment:
Q  1 cacatgcgtgacttaagtcacgcaacatgagttaactcacgct 43  Q
    |||||||||||||||| ||||||  ||||||||||||||||||    
T  45156030 cacatgcgtgacttaaatcacgctgcatgagttaactcacgct 45156072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 7130146 - 7130187
Alignment:
Q  2 acatgcgtgacttaagtcacgcaacatgagttaactcacgct 43  Q
    ||||||||||||||||||||||  | ||||||||||||||||    
T  7130146 acatgcgtgacttaagtcacgctgcgtgagttaactcacgct 7130187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13461203 - 13461244
Alignment:
Q  1 cacatgcgtgacttaagtcacgcaacatgagttaactcacgc 42  Q
    ||||||||||||||||||||||| ||  ||||||||||||||    
T  13461203 cacatgcgtgacttaagtcacgccacgcgagttaactcacgc 13461244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 41721008 - 41720967
Alignment:
Q  3 catgcgtgacttaagtcacgcaacatgagttaactcacgcta 44  Q
    ||||||||| ||||||||||| || |||||||||||||||||    
T  41721008 catgcgtgatttaagtcacgctacgtgagttaactcacgcta 41720967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 33220736 - 33220700
Alignment:
Q  6 gcgtgacttaagtcacgcaacatgagttaactcacgc 42  Q
    ||||||||||||||||||| | |||||||||||||||    
T  33220736 gcgtgacttaagtcacgcagcgtgagttaactcacgc 33220700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42629242 - 42629201
Alignment:
Q  1 cacatgcgtgacttaagtcacgcaacatgagttaactcacgc 42  Q
    ||||||| |||||||||||||||  |||||||||||||||||    
T  42629242 cacatgcatgacttaagtcacgctgcatgagttaactcacgc 42629201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1107 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 1959 - 1915
Alignment:
Q  4 atgcgtgacttaagtcacgcaacatgagttaactcacgctagttt 48  Q
    |||||||||||||||||||   | |||||||||||||||||||||    
T  1959 atgcgtgacttaagtcacgttgcgtgagttaactcacgctagttt 1915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University