View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_high_27 (Length: 349)
Name: NF1077_high_27
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 28 - 337
Target Start/End: Complemental strand, 54012931 - 54012621
Alignment:
| Q |
28 |
cagatatcacaatcttcaccacactgaaaaggacaccaatttctgcctctttatgcctctctttgacgcattaggcaatactcttaacaaaaattcatgg |
127 |
Q |
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| T |
54012931 |
cagatatcacaatcttcaccacactgaaaaggacaccaatttctgcctctttatgcctctctttgacgcattaggcaatactcttaacaaaaattcatgg |
54012832 |
T |
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| Q |
128 |
acattacacgaaacattaagttcaggttcaggtaattaacttgtcctatga-tactccactattttcatctaaatattaataatccacattatgataata |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
54012831 |
acattacacgaaacattaagttcaggttcaggtaattaacttgtcctatgattaattcactattttcatctaaatactaataatccacattatgataata |
54012732 |
T |
|
| Q |
227 |
aagttgtattgaatctttatcaatgcaggaaatggcactacggtaccacattttgttttcttggctcatatggttgatatctcatcctgcatgcatgttc |
326 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54012731 |
aagttgtattgaatctttatcaatgcaggaaatggcgctacggtaccacgctttgttttcttggctcatatggttgatatctcatcctgcatgcatgttc |
54012632 |
T |
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| Q |
327 |
cgtttgttctg |
337 |
Q |
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||||||||||| |
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| T |
54012631 |
cgtttgttctg |
54012621 |
T |
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