View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_high_29 (Length: 341)
Name: NF1077_high_29
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 30 - 335
Target Start/End: Original strand, 8497257 - 8497562
Alignment:
| Q |
30 |
atattttctccattggcatccatcacttatctgcaattatccatcacataattcagttagaaaactaatcaagagccttaatcaattttgatttatttag |
129 |
Q |
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| T |
8497257 |
atattttctccattggcatccatcacttatctgcaattatccatcatataattcagttagaaaactaatcaagagccttaatcaattttgatttatttag |
8497356 |
T |
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| Q |
130 |
tagttaatgaatgcataccattgaagcttctgatctagcacgaacggagacacgagcttttctcattgtagcttctgtatttgcttgatctgcaacattg |
229 |
Q |
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| T |
8497357 |
tagttaatgaatgcataccattgaagcttctgatctagcacgaacggagacacgagcttttctcattgtagcttctgtatttgcttgatctgcaacattg |
8497456 |
T |
|
| Q |
230 |
gaagagttcaatattttctgagacttgtttggaccccagccttgtgtttctgattctggactatcttccctaccagttttaccattgctattcctcatct |
329 |
Q |
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| T |
8497457 |
gaagagttcaatattttctgagacttgtttggaccccagccttgtgtttctgattctggactatcttccctaccagttttaccattgctattcctcatct |
8497556 |
T |
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| Q |
330 |
gtggtg |
335 |
Q |
| |
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| |||| |
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| T |
8497557 |
gaggtg |
8497562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 14009884 - 14009948
Alignment:
| Q |
155 |
gcttctgatctagcacgaacggagacacgagcttttctcattgtagcttctgtatttgcttgatc |
219 |
Q |
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| T |
14009884 |
gcttctgatctagcacggactgagactcgtgcttttctcatagtggcttctgcattggcttgatc |
14009948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 19614331 - 19614267
Alignment:
| Q |
155 |
gcttctgatctagcacgaacggagacacgagcttttctcattgtagcttctgtatttgcttgatc |
219 |
Q |
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| T |
19614331 |
gcttctgatctagcacggactgagactcgtgcttttctcatagtggcttctgcattggcttgatc |
19614267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 55365812 - 55365876
Alignment:
| Q |
155 |
gcttctgatctagcacgaacggagacacgagcttttctcattgtagcttctgtatttgcttgatc |
219 |
Q |
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| T |
55365812 |
gcttctgatctagcacggactgagactcgtgcttttctcatagtggcttctgcattggcttgatc |
55365876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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