View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_high_33 (Length: 315)
Name: NF1077_high_33
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 49289755 - 49289450
Alignment:
| Q |
1 |
tatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
49289755 |
tatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaaggg |
49289656 |
T |
|
| Q |
101 |
aagaaattaaggcttgttgttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatca |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49289655 |
aagaaattaaggcttgttgttggaaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattgatca |
49289556 |
T |
|
| Q |
201 |
attaagtccacttttactactagctagtacaaacgattatattcttcatccatgcattgattgattgcatgcatgcatacggaacaaatcaagac-aagt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49289555 |
attaagtccacttttactactagctagtacaaacgattatattcttcatccatgcattgattgattgcatgcatgcatacggaacaaatcaagacaaagt |
49289456 |
T |
|
| Q |
300 |
cctttg |
305 |
Q |
| |
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|||||| |
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| T |
49289455 |
cctttg |
49289450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 49296706 - 49296401
Alignment:
| Q |
1 |
tatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacgg |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
49296706 |
tatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaaggg |
49296607 |
T |
|
| Q |
101 |
aagaaattaaggcttgttgttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatca |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
49296606 |
aagaaattaaggcttgttgttggaaaagaaaagtagaaaagtggagaatcgtcgattagatgtttgggtcactttcaaaatcattgaaagtgattgatca |
49296507 |
T |
|
| Q |
201 |
attaagtccacttttactactagctagtacaaacgattatattcttcatccatgcattgattgattgcatgcatgcatacggaacaaatcaagac-aagt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49296506 |
attaagtccacttttactactagctagtacaaacgattatattcttcatccatgcattgattgattgcatgcatgcatacggaacaaatcaagacaaagt |
49296407 |
T |
|
| Q |
300 |
cctttg |
305 |
Q |
| |
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|||||| |
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|
| T |
49296406 |
cctttg |
49296401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 49303436 - 49303232
Alignment:
| Q |
1 |
tatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
49303436 |
tatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaaggg |
49303337 |
T |
|
| Q |
101 |
aagaaattaaggcttgttgttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatca |
200 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |||| |
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| T |
49303336 |
aagaaattaaggctt---gttgggaaagaaaagtagaaaagtggagaatcgtccattagatatttgggtcattttcaaaatcgttgaaagtgattgatca |
49303240 |
T |
|
| Q |
201 |
attaagtc |
208 |
Q |
| |
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|||||||| |
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|
| T |
49303239 |
attaagtc |
49303232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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