View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_high_35 (Length: 313)
Name: NF1077_high_35
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 7699460 - 7699743
Alignment:
| Q |
1 |
cgctggaagtgtaccggaaagaccccagccacggctgatggtgacgacggtgacacggccaggataaggtctgccgcaaccgacgaagttccagtcacaa |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7699460 |
cgctggaagcgtaccggaaagaccccagccacggctgatggtgacgacggtgactcggccaggataaggtctgccgcaaccgacgaagctccagtcacaa |
7699559 |
T |
|
| Q |
101 |
cattctgtattgttgtcccaatcgtcgaggcggcctttgggaccaccgaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaaga |
200 |
Q |
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||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7699560 |
cattcggtgttgttgtcccagtcgtcgaggcggcctttgggaccaccgaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaaga |
7699659 |
T |
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| Q |
201 |
agtcatcacttgcgtttgatttggagaagtagatggaagaaaggaagagaagtgttaggtgcagtaggagaaacatggttggag |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||| |
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| T |
7699660 |
agtcatcacttgcgtttgatttggagaagtagatggaagaaaggaagagaagtgttaagtggagtaggagaaacatgtttggag |
7699743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 7713805 - 7714088
Alignment:
| Q |
1 |
cgctggaagtgtaccggaaagaccccagccacggctgatggtgacgacggtgacacggccaggataaggtctgccgcaaccgacgaagttccagtcacaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7713805 |
cgctggaagtgtaccggaaagaccccagccacggccgatggtgacgccggtgactcggccaggataaggtctgccgcaacctacgaagttccagtcacaa |
7713904 |
T |
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| Q |
101 |
cattctgtattgttgtcccaatcgtcgaggcggcctttgggaccaccgaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaaga |
200 |
Q |
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| T |
7713905 |
cattcagtgttgttgtcccagtcgtcaagacggccgttagggccgccaaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaaga |
7714004 |
T |
|
| Q |
201 |
agtcatcacttgcgtttgatttggagaagtagatggaagaaaggaagagaagtgttaggtgcagtaggagaaacatggttggag |
284 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | ||||||| |||||| |
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| T |
7714005 |
agtcatcacttgcgtttgatttggagaagtagatggaagaaaggaagaagagtgttaggctgagtagcataaacatgtttggag |
7714088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 2 - 284
Target Start/End: Original strand, 7727323 - 7727611
Alignment:
| Q |
2 |
gctggaagtgtaccggaaagaccccagccacggctgatggtgacgacggtgacacggccaggataaggtctgccgcaaccgacgaagttccagtc---ac |
98 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| || ||||||||| ||||||| || |
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| T |
7727323 |
gctggaagcgtaccagaaagaccccagccacggctgatggtgacgacggtgattcggccaggtaggggtttgccacacccgacgaagctccagtcgctac |
7727422 |
T |
|
| Q |
99 |
aacattctgtattgttgtcccaatcgtcgaggcggcctttgggaccaccgaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaa |
198 |
Q |
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|||| |||||| |||||||||||||| ||||||||| ||||| || |||||||||||||||||||||||||| | ||||||||| | ||| |||||| | |
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| T |
7727423 |
aacagtctgtactgttgtcccaatcggagaggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcattgcagga |
7727522 |
T |
|
| Q |
199 |
gaagt---catcacttgcgtttgatttggagaagtagatggaagaaaggaagagaagtgttaggtgcagtaggagaaacatggttggag |
284 |
Q |
| |
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||| | ||||| || |||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||| || |||||| |
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| T |
7727523 |
gaactcaacatcatcagcatttgatgtggagaagtagatggaagaaaggaagagaagtgttaagtggagtaggagaaacttgtttggag |
7727611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 3 - 285
Target Start/End: Original strand, 7731484 - 7731772
Alignment:
| Q |
3 |
ctggaagtgtaccggaaagaccccagccacggctgatggtgacgacggtgacacggccaggataaggtctgccgcaaccgacgaagttccagtc---aca |
99 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | || || ||||||||| ||||||| ||| |
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| T |
7731484 |
ctggaagcgtaccggaaagaccccagccacggctgatggtgacgacggtgattcggccaggtaggggtttaccacacccgacgaagctccagtcgctaca |
7731583 |
T |
|
| Q |
100 |
acattctgtattgttgtcccaatcgtcgaggcggcctttgggaccaccgaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaag |
199 |
Q |
| |
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||| |||||| ||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||||| ||||||||| | |||||||||| || |
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| T |
7731584 |
acagtctgtaccgttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagggtggctttgtcattggcgttgcaggag |
7731683 |
T |
|
| Q |
200 |
aagt---catcacttgcgtttgatttggagaagtagatggaagaaaggaagagaagtgttaggtgcagtaggagaaacatggttggagt |
285 |
Q |
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|| | ||||| || |||||| |||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||| ||||||| |
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| T |
7731684 |
aactcaacatcatcagcatttgatgtggagaagtagatggaagaaaggaagaggagtgtcaagtggagtaggagaaacatgtttggagt |
7731772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 7739640 - 7739930
Alignment:
| Q |
1 |
cgctggaagtgtaccggaaagaccccagccacggctgatggtgacgacggtgacacggccaggataaggtctgccgcaaccgacgaagttccagtc---a |
97 |
Q |
| |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | || || ||||||||| ||||||| | |
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| T |
7739640 |
cgctggtagcgtaccggaaagaccccagccacggctgatggtgacgacggtgattcggccaggtaggggtttaccacacccgacgaagctccagtcgcta |
7739739 |
T |
|
| Q |
98 |
caacattctgtattgttgtcccaatcgtcgaggcggcctttgggaccaccgaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcaga |
197 |
Q |
| |
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||||| |||||| ||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||||| ||||||||| | |||||||||| |
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| T |
7739740 |
caacagtctgtaccgttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagggtggctttgtcattggcgttgcagg |
7739839 |
T |
|
| Q |
198 |
agaagt---catcacttgcgtttgatttggagaagtagatggaagaaaggaagagaagtgttaggtgcagtaggagaaacatggttggagt |
285 |
Q |
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|||| | ||||| || |||||| |||||||||||||||||||||||||||| ||||| | ||| |||||||||||| || ||||||| |
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| T |
7739840 |
agaactcaacatcatcagcatttgatgtggagaagtagatggaagaaaggaagaggagtgtcaagtggagtaggagaaacttgtttggagt |
7739930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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