View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1077_high_36 (Length: 312)
Name: NF1077_high_36
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 7699484 - 7699179
Alignment:
| Q |
1 |
gggtctttccggtacacttccagcggagtttggcaacctcccttatcttagcatgctctcattggccgaaatgccgaaagtaactgggccaatccctaac |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7699484 |
gggtctttccggtacgcttccagcggagtttggcaacctcccttatcttagcatgctctcattggccgaaatgccgaaagtaactgggccaatccctaac |
7699385 |
T |
|
| Q |
101 |
tctttcagcaaactccaaagactacaaaatctagaccttggttccaacagccttagtgggccaatcccctcctttctaggcaagttgaagcgcctaaagg |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7699384 |
tcttttagcaaactccaaagactacaaaatctagaccttggttccaacagccttagtgggccaatcccctcctttctaggcaagttgaagcgcctaaagg |
7699285 |
T |
|
| Q |
201 |
aggttgatttgtctaacaacaagttatccggcgctattccggcgtcactcggcaacctacaatctctttcgcagtttaatgttagttttaaccagctctg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7699284 |
aggttgatttgtctaacaacaagttatccggcactattccggcgtcactcggcaacctacaatctctttcgcagtttaatgttagctttaaccagctctg |
7699185 |
T |
|
| Q |
301 |
tggtgc |
306 |
Q |
| |
|
|||||| |
|
|
| T |
7699184 |
tggtgc |
7699179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 7713829 - 7713524
Alignment:
| Q |
1 |
gggtctttccggtacacttccagcggagtttggcaacctcccttatcttagcatgctctcattggccgaaatgccgaaagtaactgggccaatccctaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7713829 |
gggtctttccggtacacttccagcggagtttggcgacctcccttatcttagcatgctctcattggccgaaatgccgaaagtaactgggccaatccctaac |
7713730 |
T |
|
| Q |
101 |
tctttcagcaaactccaaagactacaaaatctagaccttggttccaacagccttagtgggccaatcccctcctttctaggcaagttgaagcgcctaaagg |
200 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| | | |
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|
| T |
7713729 |
tctttcagcaaactcaaaagactagaaaatctcgaccttggctccaacagccttagtgggccaatccctgaatttctgggcaagttgaagcgcctccaag |
7713630 |
T |
|
| Q |
201 |
aggttgatttgtctaacaacaagttatccggcgctattccggcgtcactcggcaacctacaatctctttcgcagtttaatgttagttttaaccagctctg |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||| |||| ||||||||| |||||||||||||| |||||||| |||||||||||||| |
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|
| T |
7713629 |
aggttgatttgtccaacaacaagttatccggtgctattccggcgtcgctcgacaacctacagtctctttcgcagttcaatgttagctttaaccagctctg |
7713530 |
T |
|
| Q |
301 |
tggtgc |
306 |
Q |
| |
|
|||||| |
|
|
| T |
7713529 |
tggtgc |
7713524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 7731506 - 7731200
Alignment:
| Q |
1 |
gggtctttccggtacacttccagcggagtttggcaacctcccttatcttagcatgctctcattggccgaaatgccgaaagtaactgggccaatccctaac |
100 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||| ||||||||||||||| | | |||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
7731506 |
gggtctttccggtacgcttccagtagagtttggcgacctcccttatcttaacttcctctcattagccgaaatgccgaaagtaactgggccaatccctaac |
7731407 |
T |
|
| Q |
101 |
tctttcagcaaactccaaagactacaaaatctagaccttggttccaacagccttagtgggccaatcccctcctttctaggcaagttgaagcgcctaaagg |
200 |
Q |
| |
|
||||| ||||||||| ||||||||||||| || ||||||||||||||||| ||||||||||| |||||| | ||||||||| |||||||| || || ||| |
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|
| T |
7731406 |
tcttttagcaaactcaaaagactacaaaaacttgaccttggttccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttacagg |
7731307 |
T |
|
| Q |
201 |
aggttgatttgtctaacaacaagttatccggcgctattccggcgtcactcggcaacctacaatctctttcgcagtttaatgttagttttaaccagctctg |
300 |
Q |
| |
|
|| ||||||||||||||||| |||||||||| | |||||||||||| ||||| | ||| |||||||||||||||||||| || |||||||| || || |
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|
| T |
7731306 |
agtttgatttgtctaacaaccagttatccggtgttattccggcgtcgttcggctccataccgtctctttcgcagtttaatgtcagctttaaccaactgtg |
7731207 |
T |
|
| Q |
301 |
tggtgct |
307 |
Q |
| |
|
||||||| |
|
|
| T |
7731206 |
tggtgct |
7731200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 7739664 - 7739358
Alignment:
| Q |
1 |
gggtctttccggtacacttccagcggagtttggcaacctcccttatcttagcatgctctcattggccgaaatgccgaaagtaactgggccaatccctaac |
100 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| |||| || ||||||| | | |||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
7739664 |
gggtctttccggtacgctaccagcggagtttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggccaattcctaac |
7739565 |
T |
|
| Q |
101 |
tctttcagcaaactccaaagactacaaaatctagaccttggttccaacagccttagtgggccaatcccctcctttctaggcaagttgaagcgcctaaagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| | |||||| | || |||||| |||||||| || || ||| |
|
|
| T |
7739564 |
tctttcagcaaactccaaagactacaaaaactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccagttgaagggcttacagg |
7739465 |
T |
|
| Q |
201 |
aggttgatttgtctaacaacaagttatccggcgctattccggcgtcactcggcaacctacaatctctttcgcagtttaatgttagttttaaccagctctg |
300 |
Q |
| |
|
|| |||||||||||||||| |||||| |||| | |||||||||||| ||||| ||||| |||||||| |||||||| || || |||||||| || || |
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|
| T |
7739464 |
agtttgatttgtctaacaataagttaaccggtgttattccggcgtcgttcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtg |
7739365 |
T |
|
| Q |
301 |
tggtgct |
307 |
Q |
| |
|
||||||| |
|
|
| T |
7739364 |
tggtgct |
7739358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 7727346 - 7727041
Alignment:
| Q |
1 |
gggtctttccggtacacttccagcggagtttggcaacctcccttatcttagcatgctctcattggccgaaatgccgaaagtaactgggccaatccctaac |
100 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||||| ||||||| ||||||| | | ||||||||||| |||||||| |||||||| || |||||||||||| |
|
|
| T |
7727346 |
gggtctttctggtacgcttccagcagagtttggcgacctcccatatcttaacttcctctcattggctgaaatgcccaaagtaaccggaccaatccctaac |
7727247 |
T |
|
| Q |
101 |
tctttcagcaaactccaaagactacaaaatctagaccttggttccaacagccttagtgggccaatcccctcctttctaggcaagttgaagcgcctaaagg |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||||||||| |||||| | ||||||||| |||||||| || || ||| |
|
|
| T |
7727246 |
tctttcagcaaactcaaaagactacaaaaacttgaccttggttccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttacagg |
7727147 |
T |
|
| Q |
201 |
aggttgatttgtctaacaacaagttatccggcgctattccggcgtcactcggcaacctacaatctctttcgcagtttaatgttagttttaaccagctctg |
300 |
Q |
| |
|
|| ||||||||||||||||| |||||||||| | |||||| ||||| ||||| | ||| |||||||||||||||||||| || |||||||| || || |
|
|
| T |
7727146 |
agtttgatttgtctaacaaccagttatccggtgttattcccgcgtcgttcggctccataccgtctctttcgcagtttaatgtcagctttaaccaactgtg |
7727047 |
T |
|
| Q |
301 |
tggtgc |
306 |
Q |
| |
|
|||||| |
|
|
| T |
7727046 |
tggtgc |
7727041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 81 - 306
Target Start/End: Original strand, 12908070 - 12908295
Alignment:
| Q |
81 |
taactgggccaatccctaactctttcagcaaactccaaagactacaaaatctagaccttggttccaacagccttagtgggccaatcccctcctttctagg |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| | | | || || | ||| ||||||| ||||||||| || |||||| |||| ||||| |
|
|
| T |
12908070 |
taactgggccaatccctaactctttcagcaaactcaaaaaattgcgaagcctcaaacttaactccaacaaccttagtggcccgatccccaccttcctagg |
12908169 |
T |
|
| Q |
181 |
caagttgaagcgcctaaaggaggttgatttgtctaacaacaagttatccggcgctattccggcgtcactcggcaacctacaatctctttcgcagtttaat |
280 |
Q |
| |
|
| |||||||||| || | |||||||||||||||||||||||||||||||| | |||||| ||||| |||| || ||||| ||||| || ||||| ||| |
|
|
| T |
12908170 |
ccggttgaagcgcttagaagaggttgatttgtctaacaacaagttatccggtgttattccagcgtcgctcgccaccctaccgtctctctcccagttgaat |
12908269 |
T |
|
| Q |
281 |
gttagttttaaccagctctgtggtgc |
306 |
Q |
| |
|
||||| | |||||| || |||||||| |
|
|
| T |
12908270 |
gttagctctaaccatctgtgtggtgc |
12908295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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