View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1077_high_40 (Length: 302)

Name: NF1077_high_40
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1077_high_40
NF1077_high_40
[»] chr5 (16 HSPs)
chr5 (25-223)||(9287885-9288083)
chr5 (26-223)||(9301230-9301436)
chr5 (25-223)||(9297015-9297222)
chr5 (25-223)||(9304848-9305055)
chr5 (25-223)||(9356820-9357027)
chr5 (25-223)||(9292408-9292615)
chr5 (25-219)||(9351378-9351581)
chr5 (25-223)||(9373942-9374149)
chr5 (25-219)||(9331650-9331853)
chr5 (25-179)||(9329209-9329372)
chr5 (25-223)||(9349438-9349648)
chr5 (28-215)||(9361258-9361435)
chr5 (25-101)||(9368036-9368112)
chr5 (126-189)||(9368149-9368212)
chr5 (126-179)||(9289758-9289810)
chr5 (191-223)||(9329372-9329404)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 9288083 - 9287885
Alignment:
Q  25 atgaacatgtctatctttcaatccattttgtctttcttggttggatcatcatcaaagtcaaaggcaaccaaatggttgaacttgatgcataagagggtaa 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9288083 atgaacatgtctatctttcaatccattttgtctttcttggttggatcatcatcaaagtcaaaggcaaccaaatggttgaacttgatgcataagagggtaa 9287984  T
Q  125 tatgtgaagagaacatggagaatttcaatgaattgcaatgtgtggaagcatctttgaaaacccttataagtgaaggtcctaatgttgcacatgaaagat 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9287983 tatgtgaagagaacatggagaatttcaatgaattgcaatgtgtggaagcatctttgaaaacccttataagtgaaggttctaatgttgcacatgaaagat 9287885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 9301436 - 9301230
Alignment:
Q  26 tgaacatgtctatctttcaatccattttgtctttcttggttggatcatcatcaaagtcaaaggcaaccaaatggttgaac---------ttgatgcataa 116  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||| |||||||||||          |||||||| ||    
T  9301436 tgaacttgtctatctttcaatctgttttgtctttcttggttggatcttcatcaaagtcaaaggcaacaaaatggttgaaagtgacaaagttgatgcaaaa 9301337  T
Q  117 gagggtaatatgtgaagagaacatggagaatttcaatgaattgcaatgtgtggaagcatctttgaaaacccttataagtgaaggtcctaatgttgcacat 216  Q
    |||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||| |||| |||||||||    
T  9301336 gagggtaacatgtgaggagaacatggagaatttcaatgaattgcagtgtgtggaagcatctttgagaacccttacaagtgaaggttctaacgttgcacat 9301237  T
Q  217 gaaagat 223  Q
    |||||||    
T  9301236 gaaagat 9301230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 9297222 - 9297015
Alignment:
Q  25 atgaacatgtctatctttcaatccattttgtctttcttggttggatcatcatcaaagtcaaaggcaaccaaatggttgaac---------ttgatgcata 115  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||          |||||||| |    
T  9297222 atgaacttgtctatctttcaatccatattgtctttcttggttggatcttcatcaaagtcaaaggcaacaaaatggttgaaagtgacaaagttgatgcaaa 9297123  T
Q  116 agagggtaatatgtgaagagaacatggagaatttcaatgaattgcaatgtgtggaagcatctttgaaaacccttataagtgaaggtcctaatgttgcaca 215  Q
    ||||||||| |||||||||||  ||||||||||||||||||||||| |||||||||||||| || | ||||||||||||||||||| ||| |||||||||    
T  9297122 agagggtaacatgtgaagagaggatggagaatttcaatgaattgcagtgtgtggaagcatcgttaagaacccttataagtgaaggttctattgttgcaca 9297023  T
Q  216 tgaaagat 223  Q
    ||| ||||    
T  9297022 tgatagat 9297015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 9305055 - 9304848
Alignment:
Q  25 atgaacatgtctatctttcaatccattttgtctttcttggttggatcatcatcaaagtcaaaggcaaccaaatggttgaac---------ttgatgcata 115  Q
    |||||| |||||||||||| |||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||          |||||||| |    
T  9305055 atgaacttgtctatctttcgatcccttttttctttcttggttggatcttcatcaaagtcaaaggcaaccaaatggttgaaagtagcaaagttgatgcaaa 9304956  T
Q  116 agagggtaatatgtgaagagaacatggagaatttcaatgaattgcaatgtgtggaagcatctttgaaaacccttataagtgaaggtcctaatgttgcaca 215  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| | |||||||  |||||||| | |||||||||||||    
T  9304955 agagggtaacatgcgaagagaacatggagaatttcaatgaattgcagtgtgttgaagcatctttaagaaccctttcaagtgaagattctaatgttgcaca 9304856  T
Q  216 tgaaagat 223  Q
    ||||||||    
T  9304855 tgaaagat 9304848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 9356820 - 9357027
Alignment:
Q  25 atgaacatgtctatctttcaatccattttgtctttcttggttggatcatcatcaaagtcaaaggcaaccaaatggttgaac---------ttgatgcata 115  Q
    |||||| ||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||| | |||||||||||          |||||||| |    
T  9356820 atgaacttgtctatctttcaatcccttttttctttcttggttggatcttcatcaaagtcaaaggcagcaaaatggttgaaagtgacaaagttgatgcaaa 9356919  T
Q  116 agagggtaatatgtgaagagaacatggagaatttcaatgaattgcaatgtgtggaagcatctttgaaaacccttataagtgaaggtcctaatgttgcaca 215  Q
    ||||||||| |||||||||||||||||||| | |||||||||| || ||||||||||||||||| | ||||||||||||||||||| |||| ||||||||    
T  9356920 agagggtaacatgtgaagagaacatggagagtatcaatgaattccagtgtgtggaagcatctttaagaacccttataagtgaaggttctaacgttgcaca 9357019  T
Q  216 tgaaagat 223  Q
    ||||||||    
T  9357020 tgaaagat 9357027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 9292615 - 9292408
Alignment:
Q  25 atgaacatgtctatctttcaatccattttgtctttcttggttggatcatcatcaaagtcaaaggcaaccaaatggttgaac---------ttgatgcata 115  Q
    |||||| ||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||          |||||||| |    
T  9292615 atgaacttgtctatctttcaatcagttttgtctttcttggttggatcttcatcaaagtcaaaggcaacaaaatggttcaaagtgacaaagttgatgcaaa 9292516  T
Q  116 agagggtaatatgtgaagagaacatggagaatttcaatgaattgcaatgtgtggaagcatctttgaaaacccttataagtgaaggtcctaatgttgcaca 215  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | |||||||  |||||| ||| ||| |||||||||    
T  9292515 agagggtaacatgtgaagagaacatggagaatttcaatgaattgcagtgtgtcgaagcatctttaagaaccctttcaagtgatggttctattgttgcaca 9292416  T
Q  216 tgaaagat 223  Q
    ||||||||    
T  9292415 tgaaagat 9292408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 219
Target Start/End: Complemental strand, 9351581 - 9351378
Alignment:
Q  25 atgaacatgtctatctttcaatccattttgtctttcttggttggatcatcatcaaagtcaaaggcaaccaaatggttgaac---------ttgatgcata 115  Q
    |||||| |||||||||||| |||| |||| ||||||||||||||||| |||||||||||||||||| | |||||||| ||          |||||||| |    
T  9351581 atgaacttgtctatctttcgatcccttttttctttcttggttggatcttcatcaaagtcaaaggcagcaaaatggttaaaagtgacaaagttgatgcaaa 9351482  T
Q  116 agagggtaatatgtgaagagaacatggagaatttcaatgaattgcaatgtgtggaagcatctttgaaaacccttataagtgaaggtcctaatgttgcaca 215  Q
    ||||||||| |||||||||||||||||||| |||||||||||| || ||||||||||||||||| | ||||||||||||||||||| | |||||||||||    
T  9351481 agagggtaacatgtgaagagaacatggagagtttcaatgaattccagtgtgtggaagcatctttaagaacccttataagtgaaggttcaaatgttgcaca 9351382  T
Q  216 tgaa 219  Q
    ||||    
T  9351381 tgaa 9351378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 9373942 - 9374149
Alignment:
Q  25 atgaacatgtctatctttcaatccattttgtctttcttggttggatcatcatcaaagtcaaaggcaaccaaatggttg---------aacttgatgcata 115  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||         || ||||||||||    
T  9373942 atgaacttgtctatctttcaatccattttctctttcttggttggatcttcatcaaagtcaaaggcaaccaaatggttgaaagtgacaaagttgatgcata 9374041  T
Q  116 agagggtaatatgtgaagagaacatggagaatttcaatgaattgcaatgtgtggaagcatctttgaaaacccttataagtgaaggtcctaatgttgcaca 215  Q
    ||||||||   | ||||||||||   || ||||||||||||||| ||||||| ||||||||||| | |||||||  |||||||||| |||||||||||||    
T  9374042 agagggtatcctctgaagagaactcagacaatttcaatgaattggaatgtgttgaagcatctttaagaaccctttcaagtgaaggttctaatgttgcaca 9374141  T
Q  216 tgaaagat 223  Q
    ||||||||    
T  9374142 tgaaagat 9374149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 25 - 219
Target Start/End: Complemental strand, 9331853 - 9331650
Alignment:
Q  25 atgaacatgtctatctttcaatccattttgtctttcttggttggatcatcatcaaagtcaaaggcaaccaaatggttgaac---------ttgatgcata 115  Q
    |||||| |||||| ||||| |||| |||| ||||||||||||||||| |||||||||||||||||| | |||||||| ||          |||||||| |    
T  9331853 atgaacttgtctacctttcgatcccttttttctttcttggttggatcttcatcaaagtcaaaggcagcaaaatggttaaaagtgacaaagttgatgcaaa 9331754  T
Q  116 agagggtaatatgtgaagagaacatggagaatttcaatgaattgcaatgtgtggaagcatctttgaaaacccttataagtgaaggtcctaatgttgcaca 215  Q
    ||||||||| |||||||||||||||||||| |||||||||||| || ||||||||||||||||| | ||||||||||||||||||| | |||||||||||    
T  9331753 agagggtaacatgtgaagagaacatggagagtttcaatgaattccagtgtgtggaagcatctttaagaacccttataagtgaaggttcaaatgttgcaca 9331654  T
Q  216 tgaa 219  Q
    ||||    
T  9331653 tgaa 9331650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 25 - 179
Target Start/End: Original strand, 9329209 - 9329372
Alignment:
Q  25 atgaacatgtctatctttcaatccattttgtctttcttggttggatcatcatcaaagtcaaaggcaaccaaatggttg---------aacttgatgcata 115  Q
    ||||||||||||||||||||||||||||||| ||||||||||||  |  |||||||||||||||||||||||||||||         || ||||||||||    
T  9329209 atgaacatgtctatctttcaatccattttgtgtttcttggttggggctgcatcaaagtcaaaggcaaccaaatggttgaaagtagcaaagttgatgcata 9329308  T
Q  116 agagggtaatatgtgaagagaacatggagaatttcaatgaattgcaatgtgtggaagcatcttt 179  Q
    |||||| || |||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  9329309 agaggggaacatgtgaagagaacatggagaatttcaatgaattggagtgtgtggaagcatcttt 9329372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 9349438 - 9349648
Alignment:
Q  25 atgaacatgtctatctttcaatccattttgtctttcttggttggatcatcatcaaagtcaaaggcaaccaaatggttgaac---------ttgatgcata 115  Q
    |||||| |||| |||||  ||||  |||| ||||||||| |||| ||  ||||||||||||||||||| |||||||||||          |||||||| |    
T  9349438 atgaacttgtcaatcttcaaatctgttttttctttcttgattgggtctccatcaaagtcaaaggcaacaaaatggttgaaagtgacaaagttgatgcaaa 9349537  T
Q  116 agagggtaatat---gtgaagagaacatggagaatttcaatgaattgcaatgtgtggaagcatctttgaaaacccttataagtgaaggtcctaatgttgc 212  Q
    |||| ||| |||   ||||| ||||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  9349538 agagagtagtatcatgtgaaaagaatttggagaatttcaatgaattgcagtgtgtggaagcatctttgagaacccttataagtgaaggttctaatgttgc 9349637  T
Q  213 acatgaaagat 223  Q
    |||||||||||    
T  9349638 acatgaaagat 9349648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 9361258 - 9361435
Alignment:
Q  28 aacatgtctatctttcaatccattttgtctttcttggttggatcatcatcaaagtcaaaggcaaccaaatggttgaacttgatgcataagagggtaatat 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |                || |||||||| ||||||||| |||    
T  9361258 aacatgtctatctttcaatccattttgtctttcttggttggatcatcatcaaagtcaca----------------aagttgatgcaaaagagggtagtat 9361341  T
Q  128 gtgaagagaacatggagaatttcaatgaattgcaatgt------gtggaagcatctttgaaaacccttataagtgaaggtcctaatgttgcaca 215  Q
    ||||||||| | |||||||||||||||||||| |  ||      |||||||||||||| | ||  ||| ||||||||||| |||||||||||||    
T  9361342 gtgaagagatcgtggagaatttcaatgaattgaagggtgtggtcgtggaagcatctttaagaaatcttttaagtgaaggttctaatgttgcaca 9361435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 9368036 - 9368112
Alignment:
Q  25 atgaacatgtctatctttcaatccattttgtctttcttggttggatcatcatcaaagtcaaaggcaaccaaatggtt 101  Q
    |||||||||||||||||||||||| || |||||||||||||||| ||  ||||||| ||||||||||||||||||||    
T  9368036 atgaacatgtctatctttcaatcccttctgtctttcttggttggttctgcatcaaaatcaaaggcaaccaaatggtt 9368112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 9368149 - 9368212
Alignment:
Q  126 atgtgaagagaacatggagaatttcaatgaattgcaatgtgtggaagcatctttgaaaaccctt 189  Q
    ||||||||||||  |||||||||||||||||||||| |  || || |||||||||| |||||||    
T  9368149 atgtgaagagaagttggagaatttcaatgaattgcagtcagttgatgcatctttgagaaccctt 9368212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 9289758 - 9289810
Alignment:
Q  126 atgtgaagagaacatggagaatttcaatgaattgcaatgtgtggaagcatcttt 179  Q
    ||||||||||||| || ||||||||||||| ||| | |||||||||||||||||    
T  9289758 atgtgaagagaacttg-agaatttcaatgagttgtagtgtgtggaagcatcttt 9289810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 9329372 - 9329404
Alignment:
Q  191 taagtgaaggtcctaatgttgcacatgaaagat 223  Q
    ||||||||||| |||||||||||||||||||||    
T  9329372 taagtgaaggttctaatgttgcacatgaaagat 9329404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University