View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1077_high_51 (Length: 255)

Name: NF1077_high_51
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1077_high_51
NF1077_high_51
[»] chr4 (3 HSPs)
chr4 (1-243)||(49289513-49289755)
chr4 (1-243)||(49296464-49296706)
chr4 (1-208)||(49303232-49303436)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 49289755 - 49289513
Alignment:
Q  1 tatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  49289755 tatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaaggg 49289656  T
Q  101 aagaaattaaggcttgttgttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatca 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49289655 aagaaattaaggcttgttgttggaaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattgatca 49289556  T
Q  201 attaagtccacttttactactagctagtacaaacgattatatt 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  49289555 attaagtccacttttactactagctagtacaaacgattatatt 49289513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 49296706 - 49296464
Alignment:
Q  1 tatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  49296706 tatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaaggg 49296607  T
Q  101 aagaaattaaggcttgttgttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatca 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  49296606 aagaaattaaggcttgttgttggaaaagaaaagtagaaaagtggagaatcgtcgattagatgtttgggtcactttcaaaatcattgaaagtgattgatca 49296507  T
Q  201 attaagtccacttttactactagctagtacaaacgattatatt 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  49296506 attaagtccacttttactactagctagtacaaacgattatatt 49296464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 49303436 - 49303232
Alignment:
Q  1 tatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  49303436 tatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaaggg 49303337  T
Q  101 aagaaattaaggcttgttgttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatca 200  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||    
T  49303336 aagaaattaaggctt---gttgggaaagaaaagtagaaaagtggagaatcgtccattagatatttgggtcattttcaaaatcgttgaaagtgattgatca 49303240  T
Q  201 attaagtc 208  Q
    ||||||||    
T  49303239 attaagtc 49303232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University