View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_high_60 (Length: 221)
Name: NF1077_high_60
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_high_60 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 54470273 - 54470080
Alignment:
| Q |
12 |
gagatgaatcctaaaccccaacatgccatcatctagaagatgagaatctacgttgatttttaagaagcccctcgagggaggactccataactgaagcact |
111 |
Q |
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| T |
54470273 |
gagatgaatcctaaaccccaacatgccatcatctagaagatgagaatctacgttgatttttaagaagcccctcgagggaggactccacaactgaagcact |
54470174 |
T |
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| Q |
112 |
ttggttcttaaatataacctccatcaattttgtttttctaacatgtaatatattcatcttccgtgtcaatccactaagtcactatattgcatat |
205 |
Q |
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| T |
54470173 |
ttagttcttaaatataacctccatcaattttgtttttctaacatgtaatatattcatcttccgtgtcaatccactaagtcactatattgcatat |
54470080 |
T |
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