View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_high_7 (Length: 547)
Name: NF1077_high_7
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 8 - 519
Target Start/End: Complemental strand, 48115519 - 48115003
Alignment:
| Q |
8 |
caccacagaatattgatcgtggcaagtaaagacatataattatgtgaatcgtgtggtagatccatggtattgttttgatttggttaatgattgagatttt |
107 |
Q |
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| T |
48115519 |
caccagagaatattgatcgtggcaagaaaagacatataattatgtgaatcgtgtggtagatccatggtattgttttgatttggttaatgattgagatttt |
48115420 |
T |
|
| Q |
108 |
atttagtggtttgtttggtatcgaaagatggacaaaacatgtgaggaagaagaaattcagagtacctaggaataatgaccgaattacttactta----gg |
203 |
Q |
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| T |
48115419 |
atttagtggtttgtttggtatcgaaagatggacaaaacatgtgaggaagaagaaattcagagtacctaggaataatgaccgaattacttacttacttagg |
48115320 |
T |
|
| Q |
204 |
caaacaataaggaatacagtcacatggattttctgtccaactcatatagctttaaatcttttt-attctgtttcattgagaagaaaagtaagatgtttta |
302 |
Q |
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| T |
48115319 |
caaacaatagggaatacagtcacatggattttctgtccaactcatatagctttaaatcttttttattctgtttcattgagaagaaaagtaagatgtttta |
48115220 |
T |
|
| Q |
303 |
tataacagttaagagaaacacattgaataagataggacatgaaaataagagtatggaagaaaagaagaattcacattttacatttaggtttttgtaaaag |
402 |
Q |
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| T |
48115219 |
tataacagttaagagaaacacattgaataagataggacatgaaaataagagtatggaagcaaagaagaattctcattttacatgtaggtttttgtaaaag |
48115120 |
T |
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| Q |
403 |
ttgagataggttcaatatcgagctttattcaaaatccgttcagttcacgattatcgaaccaatcatacaacgttgtagatgtttagtccataagtggtgg |
502 |
Q |
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| T |
48115119 |
ttgagataggttcaatatcgagctttattcaaaatccgtttaattcacgattatcgaaccaatcatacaacgtttgagatgtttagtccataagtggtgg |
48115020 |
T |
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| Q |
503 |
atagccaccgcctttgt |
519 |
Q |
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| T |
48115019 |
atagccaccgcctttgt |
48115003 |
T |
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