View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1077_high_8 (Length: 541)

Name: NF1077_high_8
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1077_high_8
NF1077_high_8
[»] chr5 (17 HSPs)
chr5 (30-316)||(7633234-7633520)
chr5 (226-375)||(7634007-7634155)
chr5 (332-434)||(14410710-14410812)
chr5 (332-408)||(25994554-25994630)
chr5 (294-358)||(29303586-29303650)
chr5 (332-436)||(17854666-17854770)
chr5 (332-408)||(25994913-25994989)
chr5 (332-408)||(26092581-26092657)
chr5 (332-375)||(14410246-14410289)
chr5 (332-375)||(32804891-32804934)
chr5 (341-379)||(17644529-17644567)
chr5 (332-381)||(7732844-7732893)
chr5 (228-289)||(8688104-8688165)
chr5 (339-408)||(15106366-15106435)
chr5 (332-405)||(25868116-25868189)
chr5 (341-377)||(1145805-1145841)
chr5 (332-408)||(26093007-26093083)
[»] chr1 (14 HSPs)
chr1 (294-512)||(37919679-37919899)
chr1 (294-445)||(11434717-11434868)
chr1 (293-357)||(44527932-44527996)
chr1 (291-359)||(24313799-24313867)
chr1 (394-446)||(37920111-37920163)
chr1 (298-440)||(32713176-32713319)
chr1 (332-408)||(7013654-7013730)
chr1 (226-316)||(28485811-28485901)
chr1 (279-375)||(37920150-37920247)
chr1 (228-289)||(39222590-39222651)
chr1 (323-359)||(24314455-24314491)
chr1 (332-360)||(37763975-37764003)
chr1 (255-370)||(42294508-42294624)
chr1 (228-316)||(46090135-46090223)
[»] chr6 (8 HSPs)
chr6 (229-360)||(1860283-1860414)
chr6 (294-375)||(31778799-31778880)
chr6 (293-359)||(30746520-30746586)
chr6 (332-434)||(32879700-32879802)
chr6 (225-352)||(5741478-5741605)
chr6 (333-445)||(26622196-26622308)
chr6 (333-445)||(26728174-26728286)
chr6 (302-347)||(31779505-31779550)
[»] chr4 (18 HSPs)
chr4 (294-377)||(26251450-26251533)
chr4 (291-359)||(34981933-34982001)
chr4 (332-438)||(19487527-19487633)
chr4 (293-358)||(34981472-34981537)
chr4 (228-308)||(23266767-23266847)
chr4 (332-427)||(32304727-32304822)
chr4 (297-340)||(40361269-40361312)
chr4 (332-426)||(32303916-32304010)
chr4 (249-408)||(53260183-53260342)
chr4 (294-377)||(55862228-55862311)
chr4 (331-432)||(36153914-36154016)
chr4 (226-375)||(40361680-40361829)
chr4 (225-305)||(20394174-20394254)
chr4 (229-316)||(156038-156125)
chr4 (293-359)||(55863649-55863715)
chr4 (251-316)||(11660781-11660846)
chr4 (327-359)||(4675037-4675069)
chr4 (276-316)||(32310466-32310506)
[»] chr2 (16 HSPs)
chr2 (294-375)||(19004778-19004859)
chr2 (297-445)||(3816243-3816390)
chr2 (294-376)||(19004906-19004988)
chr2 (225-359)||(38572297-38572431)
chr2 (294-375)||(44158268-44158349)
chr2 (294-374)||(38571626-38571706)
chr2 (294-375)||(33710863-33710945)
chr2 (297-354)||(35049524-35049581)
chr2 (228-359)||(42882455-42882585)
chr2 (393-445)||(3815836-3815888)
chr2 (293-362)||(42808604-42808674)
chr2 (293-375)||(42807436-42807518)
chr2 (395-445)||(42882596-42882646)
chr2 (297-357)||(745286-745346)
chr2 (279-316)||(1190858-1190895)
chr2 (289-359)||(303373-303444)
[»] chr7 (9 HSPs)
chr7 (291-375)||(42629204-42629288)
chr7 (293-377)||(36653729-36653813)
chr7 (291-381)||(35595258-35595348)
chr7 (277-357)||(31882911-31882991)
chr7 (295-375)||(30859819-30859900)
chr7 (228-313)||(47441554-47441639)
chr7 (332-404)||(16488152-16488224)
chr7 (222-302)||(18236713-18236793)
chr7 (339-375)||(39283936-39283972)
[»] chr8 (13 HSPs)
chr8 (227-445)||(7130034-7130253)
chr8 (445-512)||(36330330-36330397)
chr8 (445-512)||(36323484-36323551)
chr8 (293-375)||(17944828-17944910)
chr8 (332-441)||(39872120-39872228)
chr8 (291-359)||(35348635-35348703)
chr8 (391-445)||(7130581-7130635)
chr8 (293-375)||(1797709-1797792)
chr8 (293-375)||(7130619-7130702)
chr8 (227-289)||(43693703-43693765)
chr8 (342-375)||(33220703-33220736)
chr8 (332-389)||(45156358-45156415)
chr8 (332-376)||(42431682-42431726)
[»] scaffold0007 (2 HSPs)
scaffold0007 (297-375)||(186921-186999)
scaffold0007 (294-354)||(187419-187479)
[»] chr3 (11 HSPs)
chr3 (293-359)||(39708282-39708348)
chr3 (233-316)||(51170929-51171011)
chr3 (293-375)||(53038858-53038938)
chr3 (332-414)||(16280909-16280991)
chr3 (227-316)||(7789968-7790057)
chr3 (392-445)||(36754085-36754138)
chr3 (279-359)||(45003331-45003413)
chr3 (309-375)||(53831362-53831428)
chr3 (228-308)||(25227358-25227438)
chr3 (227-316)||(25226739-25226828)
chr3 (382-438)||(16280575-16280631)
[»] scaffold0012 (2 HSPs)
scaffold0012 (235-316)||(36289-36370)
scaffold0012 (332-407)||(36154-36229)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 30 - 316
Target Start/End: Original strand, 7633234 - 7633520
Alignment:
Q  30 aaattaatgatgaaaaaattaatgggggaaaaattatttaattctatgaaacttgagatgtataaggtgaagaagttgagataatttggtaaaaccgagt 129  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  7633234 aaattaatgatgaaaaaattaattggggaaaaattatttaattatatgaaacttgagatatataaggtgaagaagttgagataatttggtaaaactgagt 7633333  T
Q  130 gagagtatgggggtatgacttagcattgtacaaaattactttggacaaccataacttagcatcgtgggcgacatcttacaaagcc-cgattccttttaag 228  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||  | |||||||||||    
T  7633334 gagagtatgggggtatgacttagcattgtataaaattactttggacaa-cataacttagcatcttgggcgacatcttacaaagcctggtttccttttaag 7633432  T
Q  229 aattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgcatgtgtaaa 316  Q
    |||||| ||||||| |||| |||||||||||| |||||| || |||  |||||||  |||||| ||||||||||||||||||||||||    
T  7633433 aattttactcttcatcctgcatttttcactcgtgtcctgcagccatagcaaaaatccccttacgttagttaactaacgcatgtgtaaa 7633520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 226 - 375
Target Start/End: Complemental strand, 7634155 - 7634007
Alignment:
Q  226 aagaattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgcatgtgtaaatcaaatatg 325  Q
    ||||||| ||||||||||||||   |||||||||||| |||| || |||| |||||||| |||||| ||||||||||||||||||||||||| ||| ||     
T  7634155 aagaattatgctcttcaccctgctcttttcactcgcgccctgcagccatgtcaaaaatgcccttacgttagttaactaacgcatgtgtaaattaaacata 7634056  T
Q  326 acttaattttacacatgcgtgacttaagtcacgcagcgtgggttaactca 375  Q
    | |||||||||||||  | |||||||||||||||||| |  |||||||||    
T  7634055 agttaattttacaca-acatgacttaagtcacgcagcataagttaactca 7634007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 332 - 434
Target Start/End: Complemental strand, 14410812 - 14410710
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaactcactcatgtattgtttttgcatattc 431  Q
    ||||||||||| |||||||||||||||| ||||| |||||||||||  | ||||||||  ||||||||||||||||| || || |||||||| ||| |||    
T  14410812 ttttacacatgtgtgacttaagtcacgctgcgtgagttaactcatgctgaaattaacacgtgcgtgagttaactcacgcaagttttgttttttcattttc 14410713  T
Q  432 aca 434  Q
    |||    
T  14410712 aca 14410710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 332 - 408
Target Start/End: Original strand, 25994554 - 25994630
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaactcac 408  Q
    |||||||||||||||||||||||||||| || || ||||||||| | || |||||||| ||||||||||||||||||    
T  25994554 ttttacacatgcgtgacttaagtcacgccgcctgagttaactcacgcagaaattaacacctgcgtgagttaactcac 25994630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 29303650 - 29303586
Alignment:
Q  294 tagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacg 358  Q
    |||||||||||||||||||||||||||| || |||||||||||||||| || |||||||||||||    
T  29303650 tagttaactaacgcatgtgtaaatcaaacattacttaattttacacatacgcgacttaagtcacg 29303586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 332 - 436
Target Start/End: Complemental strand, 17854770 - 17854666
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaactcactcatgtattgtttttgcatattc 431  Q
    |||||||||||||||||||| ||||| | ||||| ||||||||| |  | ||||||||  || ||||||||||||||| | |  |||||||||||| |||    
T  17854770 ttttacacatgcgtgacttaggtcacactgcgtgagttaactcacgctgaaattaacacttgtgtgagttaactcacttaagctttgtttttgcattttc 17854671  T
Q  432 acaat 436  Q
    |||||    
T  17854670 acaat 17854666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 332 - 408
Target Start/End: Complemental strand, 25994989 - 25994913
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaactcac 408  Q
    |||||||||||||||||||||||||||| || || ||||||||| |   |||||||||  |||||||||||||||||    
T  25994989 ttttacacatgcgtgacttaagtcacgctgcatgagttaactcacgcgagaattaacacttgcgtgagttaactcac 25994913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 408
Target Start/End: Original strand, 26092581 - 26092657
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaactcac 408  Q
    |||||||| |||||||||||||||| |  || || ||||||||| | || |||||||| ||||| ||||||||||||    
T  26092581 ttttacacttgcgtgacttaagtcatgtcgcatgagttaactcacgcagaaattaacacctgcgagagttaactcac 26092657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 375
Target Start/End: Original strand, 14410246 - 14410289
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactca 375  Q
    ||||| |||||||||||||||||||||| ||||| |||||||||    
T  14410246 ttttatacatgcgtgacttaagtcacgctgcgtgagttaactca 14410289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 375
Target Start/End: Complemental strand, 32804934 - 32804891
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactca 375  Q
    ||||||||||| |||||||||||||||| ||||| |||||||||    
T  32804934 ttttacacatgtgtgacttaagtcacgccgcgtgagttaactca 32804891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 379
Target Start/End: Original strand, 17644529 - 17644567
Alignment:
Q  341 tgcgtgacttaagtcacgcagcgtgggttaactcatgta 379  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  17644529 tgcgtgatttaagtcacgcagcgtgagttaactcatgta 17644567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 7732893 - 7732844
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtagg 381  Q
    ||||||||||||||||||||||||||||  | || ||||||||| |||||    
T  7732893 ttttacacatgcgtgacttaagtcacgccacatgagttaactcacgtagg 7732844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 8688104 - 8688165
Alignment:
Q  228 gaattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtcctt 289  Q
    ||||| ||||||||||||||||  |||  ||||||||||| || |||| |||||||||||||    
T  8688104 gaattctgctcttcaccctgtacattttgctcgcgtcctggagccatgtcaaaaatgtcctt 8688165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 408
Target Start/End: Complemental strand, 15106435 - 15106366
Alignment:
Q  339 catgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaactcac 408  Q
    |||||||||||||||||||| ||| || |||||||||  || |   ||||| ||||||||||||||||||    
T  15106435 catgcgtgacttaagtcacggagcatgagttaactcacataaggtataacacctgcgtgagttaactcac 15106366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 405
Target Start/End: Original strand, 25868116 - 25868189
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaact 405  Q
    ||||||||||| |||||||||||||||| || || ||||||||| | | |  ||||||  ||||||||||||||    
T  25868116 ttttacacatgtgtgacttaagtcacgctgcatgagttaactcacgcatgtgttaacacgtgcgtgagttaact 25868189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 377
Target Start/End: Original strand, 1145805 - 1145841
Alignment:
Q  341 tgcgtgacttaagtcacgcagcgtgggttaactcatg 377  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  1145805 tgcgtgacttaagacacgcagcgtgagttaactcatg 1145841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 408
Target Start/End: Complemental strand, 26093083 - 26093007
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaactcac 408  Q
    ||||||||||| |||||||||||||||| |  ||  |||||| | | |||||||||||  |||||||||||| ||||    
T  26093083 ttttacacatgtgtgacttaagtcacgccgtatgaattaacttacgcaggaattaacacgtgcgtgagttaagtcac 26093007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 5e-76; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 294 - 512
Target Start/End: Original strand, 37919679 - 37919899
Alignment:
Q  294 tagttaactaacgcatgtgtaaatcaaatatgactta-attttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaact 392  Q
    ||||||||||||| |||||||||   || || |||||  ||||||||||||||||||||||||| ||| | |||||||| ||| ||||||||||||| ||    
T  37919679 tagttaactaacgtatgtgtaaaattaacataacttagtttttacacatgcgtgacttaagtcatgcaacatgggttaattcacgtaggaattaacatct 37919778  T
Q  393 gcgtgagttaactcactcatgtattgtttttgcatattcacaatgtttttgc-aaaatgcagtgtgtgaaaaaattagtggcaaccatgaagcttttctc 491  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  37919779 gcgtgagttaactcacgcatgtattgtttttgcatattcacaatgtttttgcaaaaatgcagtgcgtgaaaaaattagtggcaaccatgaagcttttctc 37919878  T
Q  492 ttcattagtctatacgtgttg 512  Q
    |||||||||||||||||||||    
T  37919879 ttcattagtctatacgtgttg 37919899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 294 - 445
Target Start/End: Original strand, 11434717 - 11434868
Alignment:
Q  294 tagttaactaacgcatgtgtaaatcaaatatgacttaatttt-acacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaact 392  Q
    ||||||||||||||| |||||||  |||| ||||||| |||| |||||||| ||||||||||||| | ||||| ||||||||| |  ||||||||||  |    
T  11434717 tagttaactaacgcaagtgtaaaaaaaat-tgacttagtttttacacatgcctgacttaagtcacactgcgtgagttaactcacgctggaattaacacat 11434815  T
Q  393 gcgtgagttaactcactcatgtattgtttttgcatattcacaatgtttttgca 445  Q
    || ||||||| ||||| || ||||||||||  |||||||||||||||||||||    
T  11434816 gcctgagttagctcacacaagtattgttttgtcatattcacaatgtttttgca 11434868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 293 - 357
Target Start/End: Original strand, 44527932 - 44527996
Alignment:
Q  293 ttagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcac 357  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44527932 ttagttaactaacgcatgtgtaaatcaaacatgacttaattttacacatgcgtgacttaagtcac 44527996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 24313799 - 24313867
Alignment:
Q  291 cattagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacgc 359  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||| ||||||    
T  24313799 cattagttaactaacgcatgtgtaaatcaaacgtgacttaattttacacatgcgtaacttaaatcacgc 24313867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 37920163 - 37920111
Alignment:
Q  394 cgtgagttaactcactcatgtattgtttttgcatattcacaatgtttttgcaa 446  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  37920163 cgtgagttaactcacgcatgtattgtttttgcatgttcacaatgtttttgcaa 37920111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 298 - 440
Target Start/End: Original strand, 32713176 - 32713319
Alignment:
Q  298 taactaacgcatgtgtaaatcaaatatgacttaatttta-cacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgt 396  Q
    ||||||||||| |||||||  || | ||| ||| ||||| ||||| ||||||||||||||||| ||||| ||||||||| |    ||||||||  |||||    
T  32713176 taactaacgcaagtgtaaaaaaattttgatttagttttaacacatacgtgacttaagtcacgctgcgtgagttaactcacgctaaaattaacacttgcgt 32713275  T
Q  397 gagttaactcactcatgtattgtttttgcatattcacaatgttt 440  Q
    ||||||||||||  | || |||||||||||| |||| |||||||    
T  32713276 gagttaactcacgtaagttttgtttttgcattttcaaaatgttt 32713319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 408
Target Start/End: Complemental strand, 7013730 - 7013654
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaactcac 408  Q
    |||||||||||||| |||||| |||||  || |  ||||||||| ||||||||||||| |||||||| |||||||||    
T  7013730 ttttacacatgcgtaacttaaatcacgtcgcataagttaactcacgtaggaattaacacctgcgtgaattaactcac 7013654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 316
Target Start/End: Original strand, 28485811 - 28485901
Alignment:
Q  226 aagaattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgcatgtgtaaa 316  Q
    ||||||| |||||||| ||||| | ||||| |||||| |||| || ||| |||||||||  ||||| |||||||||||| ||| |||||||    
T  28485811 aagaattctgctcttccccctgcacttttcgctcgcgacctgcagccatcccaaaaatgctcttacgttagttaactaatgcaagtgtaaa 28485901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 375
Target Start/End: Complemental strand, 37920247 - 37920150
Alignment:
Q  279 aaaatgtccttacattagttaactaacgcatgtgtaaatcaaatatgactta-attttacacatgcgtgacttaagtcacgcagcgtgggttaactca 375  Q
    |||||| |||| |||||||||||||||| |  | ||||   ||||| |||||  ||||||||||||||||||||| ||||||| |||| |||||||||    
T  37920247 aaaatgcccttgcattagttaactaacgtaaatataaaattaatataacttagtttttacacatgcgtgacttaaatcacgcaacgtgagttaactca 37920150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 39222590 - 39222651
Alignment:
Q  228 gaattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtcctt 289  Q
    |||||||||||||||||||| |  |||  |||||| |||| || ||||||||||||||||||    
T  39222590 gaattttgctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgtcctt 39222651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 24314491 - 24314455
Alignment:
Q  323 atgacttaattttacacatgcgtgacttaagtcacgc 359  Q
    |||||||||||||||||||  ||||||||||||||||    
T  24314491 atgacttaattttacacatatgtgacttaagtcacgc 24314455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 360
Target Start/End: Original strand, 37763975 - 37764003
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgca 360  Q
    |||||||||||||||||||||||||||||    
T  37763975 ttttacacatgcgtgacttaagtcacgca 37764003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 370
Target Start/End: Complemental strand, 42294624 - 42294508
Alignment:
Q  255 cactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgcatgtgtaaatcaaatatgacttaatttt-acacatgcgtgacttaag 353  Q
    |||||||| |||| |||  |||| |||||  |||| | |||||||| || |||| |||||||  | | |||||||| |||| ||||||| ||||||||||    
T  42294624 cactcgcgccctgcagtgttgccgaaaatacccttgcgttagttaattagcgcaagtgtaaaaaatacatgacttagtttttacacatgtgtgacttaag 42294525  T
Q  354 tcacgcagcgtgggtta 370  Q
    |||||| ||||| ||||    
T  42294524 tcacgctgcgtgagtta 42294508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 316
Target Start/End: Original strand, 46090135 - 46090223
Alignment:
Q  228 gaattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgcatgtgtaaa 316  Q
    ||||| ||||||||  |||| | ||||| ||||||||||| || ||| |||||||| ||||||  ||| ||||||||| || |||||||    
T  46090135 gaattctgctcttcctcctgcacttttcgctcgcgtcctgcagccatcccaaaaatatccttatgttaattaactaacacaagtgtaaa 46090223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 5e-42; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 229 - 360
Target Start/End: Original strand, 1860283 - 1860414
Alignment:
Q  229 aattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgcatgtgtaaatcaaatatgact 328  Q
    ||||||||||||||||||| | |||||||||||  |||| ||  ||| |||||||| |||||| ||||||||||||||||||||||||||||| ||||||    
T  1860283 aattttgctcttcaccctgcacttttcactcgcaccctgcagcaatgtcaaaaatgcccttacgttagttaactaacgcatgtgtaaatcaaacatgact 1860382  T
Q  329 taattttacacatgcgtgacttaagtcacgca 360  Q
    ||||||||||||||||||||||||||||||||    
T  1860383 taattttacacatgcgtgacttaagtcacgca 1860414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 31778799 - 31778880
Alignment:
Q  294 tagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacgcagcgtgggttaactca 375  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| || || |||||||||    
T  31778799 tagttaactaacgcatgtgtaaatcaaacgtgacttaattttacacatgcgtgacttaagtcacgccgcatgagttaactca 31778880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 30746586 - 30746520
Alignment:
Q  293 ttagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacgc 359  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30746586 ttagttaactaacgcacgtgtaaatcaaacatgacttaattttacacatgcgtgacttaagtcacgc 30746520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 434
Target Start/End: Original strand, 32879700 - 32879802
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaactcactcatgtattgtttttgcatattc 431  Q
    |||||||| ||||||||||||||||||| ||||| ||||||||| |  | ||||||||  ||||||||||||||||  || || || ||||||||| |||    
T  32879700 ttttacacttgcgtgacttaagtcacgctgcgtgagttaactcacgctgaaattaacacatgcgtgagttaactcaagcaagttttatttttgcattttc 32879799  T
Q  432 aca 434  Q
    |||    
T  32879800 aca 32879802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 352
Target Start/End: Complemental strand, 5741605 - 5741478
Alignment:
Q  225 taagaattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgcatgtgtaaatcaaatat 324  Q
    |||||||| |||||||||||||| | ||||| |||||| |||| || |||| | |||||   | | | |||||||||||||||| |||||||  |||| |    
T  5741605 taagaattctgctcttcaccctgcacttttcgctcgcgccctgcagccatgaccaaaatacacctgcgttagttaactaacgcaagtgtaaaaaaaat-t 5741507  T
Q  325 gacttaatt-ttacacatgcgtgacttaa 352  Q
    ||||||||| ||||||||| |||||||||    
T  5741506 gacttaattattacacatgtgtgacttaa 5741478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 445
Target Start/End: Complemental strand, 26622308 - 26622196
Alignment:
Q  333 tttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaactcactcatgtattgtttttgcatattca 432  Q
    |||||||||| ||||| ||| ||| || ||||  ||||||||  |  | |||||||| |||||||||||||||||| ||  |||||||||  ||||||||    
T  26622308 tttacacatgtgtgacataaatcatgctgcgtaagttaactcgcgctgaaattaacacctgcgtgagttaactcacacaaatattgttttgtcatattca 26622209  T
Q  433 caatgtttttgca 445  Q
    || ||||||||||    
T  26622208 cattgtttttgca 26622196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 445
Target Start/End: Complemental strand, 26728286 - 26728174
Alignment:
Q  333 tttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaactcactcatgtattgtttttgcatattca 432  Q
    |||||||||| ||||| ||| ||| || ||||  ||||||||  |  | |||||||| |||||||||||||||||| ||  |||||||||  ||||||||    
T  26728286 tttacacatgtgtgacataaatcatgctgcgtaagttaactcgcgctgaaattaacacctgcgtgagttaactcacacaaatattgttttgtcatattca 26728187  T
Q  433 caatgtttttgca 445  Q
    || ||||||||||    
T  26728186 cattgtttttgca 26728174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 31779550 - 31779505
Alignment:
Q  302 taacgcatgtgtaaatcaaatatgacttaattttacacatgcgtga 347  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||||    
T  31779550 taacgcatgtgtaaattaaacatgatttaattttacacatgcgtga 31779505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 294 - 377
Target Start/End: Original strand, 26251450 - 26251533
Alignment:
Q  294 tagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacgcagcgtgggttaactcatg 377  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |  || |||||||||||    
T  26251450 tagttaactaacgcatgtgtaaatcaaacatgacttaattttacacatgcgtgacttaagtcacgccgtatgagttaactcatg 26251533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 34982001 - 34981933
Alignment:
Q  291 cattagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacgc 359  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  34982001 cattagttaactaacgtatgtgtaaatcaaacatgacttaattttacacatgtgtgacttaagtcacgc 34981933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 332 - 438
Target Start/End: Original strand, 19487527 - 19487633
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaactcactcatgtattgtttttgcatattc 431  Q
    ||||||||||||||||||||| |||||| ||||| |||||||||||    ||| |||| |||||||||||||||||| || ||  ||||||||||| |||    
T  19487527 ttttacacatgcgtgacttaactcacgctgcgtgagttaactcatgctaaaataaacatctgcgtgagttaactcacgcaggttctgtttttgcattttc 19487626  T
Q  432 acaatgt 438  Q
    |||||||    
T  19487627 acaatgt 19487633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 293 - 358
Target Start/End: Original strand, 34981472 - 34981537
Alignment:
Q  293 ttagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacg 358  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||| | ||||||||||    
T  34981472 ttagttaactaacgcatgtgtaaatcaaacatgacttaattttacatatgcgtcagttaagtcacg 34981537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 23266847 - 23266767
Alignment:
Q  228 gaattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgca 308  Q
    |||||||||||||| ||||| ||||||| |||||| |||| || ||| | |||||||||||||| ||| ||||||||||||    
T  23266847 gaattttgctcttccccctgcatttttcgctcgcgccctgcagccatcctaaaaatgtccttacgttacttaactaacgca 23266767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 427
Target Start/End: Complemental strand, 32304822 - 32304727
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaactcactcatgtattgtttttgcat 427  Q
    ||||||||||||||||||||||||| || | ||| ||||||||| |  | ||||||||  || |||||||||||||| || || ||||||||||||    
T  32304822 ttttacacatgcgtgacttaagtcatgctgggtgagttaactcacgctgaaattaacacatgtgtgagttaactcacgcaagttttgtttttgcat 32304727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 340
Target Start/End: Original strand, 40361269 - 40361312
Alignment:
Q  297 ttaactaacgcatgtgtaaatcaaatatgacttaattttacaca 340  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  40361269 ttaactaacgcatgtgtaaatcaaacatgacttaattttacaca 40361312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 332 - 426
Target Start/End: Original strand, 32303916 - 32304010
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaactcactcatgtattgtttttgca 426  Q
    |||||||||| ||||||||||||||||  || || ||||||||| | |||||||||||  || |||||||||||||| ||  | |||||||||||    
T  32303916 ttttacacatacgtgacttaagtcacgtcgcatgagttaactcacgcaggaattaacacatgtgtgagttaactcacacagattttgtttttgca 32304010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 408
Target Start/End: Complemental strand, 53260342 - 53260183
Alignment:
Q  249 atttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgcatgtgtaaatcaaatatgactta-attttacacatgcgtga 347  Q
    ||||||| ||||||||||| || |||| | ||||| |  ||||||||||||| ||| ||| |||||||  |||  ||| |||  |||||||||| |||||    
T  53260342 atttttcgctcgcgtcctgcagccatgacgaaaatatt-ttacattagttaattaatgcaagtgtaaaaaaaacgtgatttagtttttacacatacgtga 53260244  T
Q  348 cttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaactcac 408  Q
    |||||||||||| ||||| |||||| || |  | ||||||||  ||||||||| |||||||    
T  53260243 cttaagtcacgctgcgtgagttaacccacgccgaaattaacacatgcgtgagtcaactcac 53260183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 294 - 377
Target Start/End: Original strand, 55862228 - 55862311
Alignment:
Q  294 tagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacgcagcgtgggttaactcatg 377  Q
    |||||||||||| ||||||||||  | |  ||||||||||||||||||  |||||||||||||||| || |  |||||||||||    
T  55862228 tagttaactaactcatgtgtaaaatatacgtgacttaattttacacatatgtgacttaagtcacgccgcataagttaactcatg 55862311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 432
Target Start/End: Complemental strand, 36154016 - 36153914
Alignment:
Q  331 attttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtag-gaattaacaactgcgtgagttaactcactcatgtattgtttttgcatat 429  Q
    |||||||||||||||||||||||| |||| ||||| ||||| ||| |  |  |||||||| |||||||||||||||||  ||  | |||||||||||| |    
T  36154016 attttacacatgcgtgacttaagttacgccgcgtgagttaagtcacgccgaaaattaacacctgcgtgagttaactcaagcaaattttgtttttgcattt 36153917  T
Q  430 tca 432  Q
    |||    
T  36153916 tca 36153914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 375
Target Start/End: Complemental strand, 40361829 - 40361680
Alignment:
Q  226 aagaattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgcatgtgtaaatcaaatatg 325  Q
    ||||||| | |||||||||||| | ||||| |||||| |||| || |||| | ||||| ||| | |  |||||||||| || | |||||||  |||   |    
T  40361829 aagaattcttctcttcaccctgcacttttcgctcgcgccctgcagccatgaccaaaatatccctgcgctagttaactagcgtacgtgtaaaa-aaacggg 40361731  T
Q  326 acttaatttt-acacatgcgtgacttaagtcacgcagcgtgggttaactca 375  Q
    |||||||||| ||||||||||||||||||||||||  |||| |||||||||    
T  40361730 acttaatttttacacatgcgtgacttaagtcacgccacgtgagttaactca 40361680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 305
Target Start/End: Complemental strand, 20394254 - 20394174
Alignment:
Q  225 taagaattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaac 305  Q
    ||||||||||||||||| ||||| | ||||| |||||| |||| || |||  |||||||| |||||| ||| |||||||||    
T  20394254 taagaattttgctcttccccctgcacttttcgctcgcgccctgcagccatctcaaaaatgcccttacgttacttaactaac 20394174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 316
Target Start/End: Original strand, 156038 - 156125
Alignment:
Q  229 aattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgcatgtgtaaa 316  Q
    |||| ||||||||||||| ||  |||  |||||| |||| || ||| ||||| || ||||||| |||||||||||||||| |||||||    
T  156038 aattatgctcttcaccctatacattttgctcgcgccctgcagccattccaaatatatccttacgttagttaactaacgcaagtgtaaa 156125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 55863715 - 55863649
Alignment:
Q  293 ttagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacgc 359  Q
    |||||||| ||||| ||||||||| ||||  | ||||||||||| ||||  ||||||||||||||||    
T  55863715 ttagttaattaacgtatgtgtaaaacaaacgtaacttaattttatacatatgtgacttaagtcacgc 55863649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 11660781 - 11660846
Alignment:
Q  251 ttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgcatgtgtaaa 316  Q
    ||||||||||||  ||| || ||| |||||||| ||||| | |||||||||||||||| |||||||    
T  11660781 ttttcactcgcgctctgcagccatcccaaaaatatccttgcgttagttaactaacgcaagtgtaaa 11660846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 4675037 - 4675069
Alignment:
Q  327 cttaattttacacatgcgtgacttaagtcacgc 359  Q
    |||| ||||||||||||||||||||||||||||    
T  4675037 cttatttttacacatgcgtgacttaagtcacgc 4675069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 32310506 - 32310466
Alignment:
Q  276 ccaaaaatgtccttacattagttaactaacgcatgtgtaaa 316  Q
    ||||||||| |||||| |||||||||||||||| |||||||    
T  32310506 ccaaaaatgcccttacgttagttaactaacgcaagtgtaaa 32310466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 19004778 - 19004859
Alignment:
Q  294 tagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacgcagcgtgggttaactca 375  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| || || |||||||||    
T  19004778 tagttaactaacgcaagtgtaaatcaaacatgacttaattttacacatgcgtgacttaagtcacgccgcatgagttaactca 19004859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 297 - 445
Target Start/End: Complemental strand, 3816390 - 3816243
Alignment:
Q  297 ttaactaacgcatgtgtaaatcaaatatgacttaatttt-acacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcg 395  Q
    |||||||||||| |||||||  |||  |||||||||||| ||| ||| |||||||||||||||| ||||| ||||||||| || | |||||||| |||||    
T  3816390 ttaactaacgcaagtgtaaa--aaaattgacttaatttttacatatgtgtgacttaagtcacgctgcgtgagttaactcacgttgtaattaacacctgcg 3816293  T
Q  396 tgagttaactcactcatgtattgtttttgcatattcacaatgtttttgca 445  Q
    | ||||||||||| || ||||||||||   ||||||| ||||||||||||    
T  3816292 taagttaactcacgcaagtattgttttgctatattcataatgtttttgca 3816243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 294 - 376
Target Start/End: Complemental strand, 19004988 - 19004906
Alignment:
Q  294 tagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacgcagcgtgggttaactcat 376  Q
    ||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||| |||||| || || ||||||||||    
T  19004988 tagttaactaacgcaagtgtaaatcaaacttgacttaattttacacatgcgtgacttaaatcacgccgcatgagttaactcat 19004906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 225 - 359
Target Start/End: Complemental strand, 38572431 - 38572297
Alignment:
Q  225 taagaattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgcatgtgtaaatcaaatat 324  Q
    |||||||  |||||||||||||| ||||||||||||||  ||| |   || || ||||| ||| | ||||| |||||||| ||| |||||||| ||| ||    
T  38572431 taagaatcatgctcttcaccctgcatttttcactcgcgctctgcaactataccgaaaatatccatgcattaattaactaatgcaagtgtaaattaaacat 38572332  T
Q  325 gacttaattttacacatgcgtgacttaagtcacgc 359  Q
    | ||||| |||| |||| |||||||||||||||||    
T  38572331 gtcttaaatttatacatacgtgacttaagtcacgc 38572297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 44158268 - 44158349
Alignment:
Q  294 tagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacgcagcgtgggttaactca 375  Q
    |||||||||||| |||||||||||||||  ||| ||||||||||||||| | ||||||||| |||| || || |||||||||    
T  44158268 tagttaactaacacatgtgtaaatcaaacgtgaattaattttacacatgtgcgacttaagttacgccgcatgagttaactca 44158349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 294 - 374
Target Start/End: Original strand, 38571626 - 38571706
Alignment:
Q  294 tagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacgcagcgtgggttaactc 374  Q
    |||||||||| ||||  ||||||||||| ||| ||||| |||||||||| |||||||||||||||| || || ||||||||    
T  38571626 tagttaactagcgcaaatgtaaatcaaacatgtcttaaatttacacatgtgtgacttaagtcacgctgcatgagttaactc 38571706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 33710863 - 33710945
Alignment:
Q  294 tagttaactaacgcatgtgtaaatcaaatatgacttaa-ttttacacatgcgtgacttaagtcacgcagcgtgggttaactca 375  Q
    ||||||||||||||| |||||||  | |  ||| |||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  33710863 tagttaactaacgcaagtgtaaaaaatacgtgagttaatttttacacatgcgtgacttaagtcacgctgcgtgagttaactca 33710945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 35049524 - 35049581
Alignment:
Q  297 ttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagt 354  Q
    |||||||||||||||||||||||||  ||| |||||||||||||| || |||||||||    
T  35049524 ttaactaacgcatgtgtaaatcaaacgtgatttaattttacacatacgcgacttaagt 35049581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 359
Target Start/End: Original strand, 42882455 - 42882585
Alignment:
Q  228 gaattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgcatgtgtaaatcaaatatgac 327  Q
    ||||| |||||||||||||| | ||||| ||| || |||| || |||| | |||||  || |||  ||||||||||||||| |||||||  |||  ||||    
T  42882455 gaattctgctcttcaccctgcacttttcgctcacgccctgcagccatgactaaaatacccctacgctagttaactaacgcaagtgtaaa--aaaattgac 42882552  T
Q  328 ttaatttt-acacatgcgtgacttaagtcacgc 359  Q
    ||| |||| ||||||||||||||||||||||||    
T  42882553 ttagtttttacacatgcgtgacttaagtcacgc 42882585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 445
Target Start/End: Original strand, 3815836 - 3815888
Alignment:
Q  393 gcgtgagttaactcactcatgtattgtttttgcatattcacaatgtttttgca 445  Q
    |||||||||||||||| || ||||||||||  |||||||||||||||||||||    
T  3815836 gcgtgagttaactcacgcaagtattgttttgccatattcacaatgtttttgca 3815888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 362
Target Start/End: Complemental strand, 42808674 - 42808604
Alignment:
Q  293 ttagttaactaacgcatgtgtaaatcaaatatgacttaattt--tacacatgcgtgacttaagtcacgcagc 362  Q
    |||||||||||||||| |||||||  |||| ||||||| |||  ||||||||||||||||||||||||||||    
T  42808674 ttagttaactaacgcaagtgtaaaa-aaatgtgacttagtttcttacacatgcgtgacttaagtcacgcagc 42808604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 375
Target Start/End: Original strand, 42807436 - 42807518
Alignment:
Q  293 ttagttaactaacgcatgtgtaaatcaaatatgacttaatttt--acacatgcgtgacttaagtcacgcagcgtgggttaactca 375  Q
    |||||||||||||||| |||||||  ||| |||||||| ||||  |||||| ||||||||||||||||| || || |||||||||    
T  42807436 ttagttaactaacgcaagtgtaaa--aaacatgacttagttttttacacatacgtgacttaagtcacgccgcatgagttaactca 42807518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 445
Target Start/End: Original strand, 42882596 - 42882646
Alignment:
Q  395 gtgagttaactcactcatgtattgtttttgcatattcacaatgtttttgca 445  Q
    |||||||||||||| || ||||||||||  |||||||||||||||||||||    
T  42882596 gtgagttaactcacgcaggtattgttttgccatattcacaatgtttttgca 42882646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 745286 - 745346
Alignment:
Q  297 ttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcac 357  Q
    ||||||| || | |||||||||||||||  ||||| ||||||||||||| |||||||||||    
T  745286 ttaactagcgtaagtgtaaatcaaatatatcttaaatttacacatgcgtaacttaagtcac 745346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 1190858 - 1190895
Alignment:
Q  279 aaaatgtccttacattagttaactaacgcatgtgtaaa 316  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  1190858 aaaatatccctacattagttaactaacgcatgtgtaaa 1190895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 359
Target Start/End: Original strand, 303373 - 303444
Alignment:
Q  289 tacattagttaactaacgcatgtgtaaatcaaatatgacttaatttt---acacatgcgtgacttaagtcacgc 359  Q
    ||||||||||||||||||||  ||||||  |||| ||||||| ||||   ||||||| ||||||||||||||||    
T  303373 tacattagttaactaacgcaaatgtaaa--aaatgtgacttagttttcttacacatgtgtgacttaagtcacgc 303444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 291 - 375
Target Start/End: Complemental strand, 42629288 - 42629204
Alignment:
Q  291 cattagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacgcagcgtgggttaactca 375  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| || || |||||||||    
T  42629288 cattagttaactaacgcatgtgtaaatcatacatgacttaattttacacatgcatgacttaagtcacgctgcatgagttaactca 42629204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 36653813 - 36653729
Alignment:
Q  293 ttagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacgcagcgtgggttaactcatg 377  Q
    |||||||||||||||||||||||||||||  ||||||||||||| | |||||||||||||||||||| ||  | |||||||||||    
T  36653813 ttagttaactaacgcatgtgtaaatcaaacgtgacttaattttatatatgcgtgacttaagtcacgctgcaagagttaactcatg 36653729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 291 - 381
Target Start/End: Complemental strand, 35595348 - 35595258
Alignment:
Q  291 cattagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtagg 381  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||||| || || |||||||||||||| || || ||||||||| |||||    
T  35595348 cattagttaactaacgcaagtgtaaaacaaatatgatttaattttacatatacgggacttaagtcacgccgcatgagttaactcacgtagg 35595258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 277 - 357
Target Start/End: Complemental strand, 31882991 - 31882911
Alignment:
Q  277 caaaaatgtccttacattagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcac 357  Q
    ||||||||| | | || |||||||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||    
T  31882991 caaaaatgttcctgcactagttaactaacgcatgtgtaaaataaacatgtcttaattttacacatgcgtgacttaagtcac 31882911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 295 - 375
Target Start/End: Original strand, 30859819 - 30859900
Alignment:
Q  295 agttaactaacgcatgtgtaaatcaaatatgactta-attttacacatgcgtgacttaagtcacgcagcgtgggttaactca 375  Q
    |||||||||||||| |||||||  |||   ||||||  |||||||||||| ||||||||||||||| ||||| |||||||||    
T  30859819 agttaactaacgcaagtgtaaaaaaaacgggacttagtttttacacatgcatgacttaagtcacgccgcgtgagttaactca 30859900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 313
Target Start/End: Original strand, 47441554 - 47441639
Alignment:
Q  228 gaattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgcatgtgt 313  Q
    ||||| |||||||||||||| | ||||  |||||||||||||| | ||||||||||| |  | | |||||||| ||||||| ||||    
T  47441554 gaattatgctcttcaccctgcactttttgctcgcgtcctgtagccttgccaaaaatgcctctgcgttagttaagtaacgcaagtgt 47441639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 404
Target Start/End: Complemental strand, 16488224 - 16488152
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaac 404  Q
    ||||||||||| |||||||||||||||| || || ||||| ||| | |||  ||||||  |||||||||||||    
T  16488224 ttttacacatgtgtgacttaagtcacgctgcatgagttaattcacgcaggtgttaacacatgcgtgagttaac 16488152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 302
Target Start/End: Original strand, 18236713 - 18236793
Alignment:
Q  222 ttttaagaattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaact 302  Q
    |||| |||||| ||||||||| |||| || |||  |||||| ||||| ||||||| |||||||||||| |  |||||||||    
T  18236713 tttttagaattctgctcttcatcctgcatattttgctcgcgccctgtcgtcatgctaaaaatgtccttgcgctagttaact 18236793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 39283936 - 39283972
Alignment:
Q  339 catgcgtgacttaagtcacgcagcgtgggttaactca 375  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  39283936 catgcgtgagttaagtcacgcagcgtggcttaactca 39283972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 227 - 445
Target Start/End: Original strand, 7130034 - 7130253
Alignment:
Q  227 agaattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgcatgtgtaaatcaaatatga 326  Q
    |||||| ||||||| |||||| ||||||| ||||||||||| |||||||   ||||| ||  | |  ||||||| |||  || |||||||  |||  |||    
T  7130034 agaattctgctctttaccctgcatttttcgctcgcgtcctgcagtcatgatcaaaatatctctgcgctagttaattaatacaagtgtaaaagaaaattga 7130133  T
Q  327 cttaatttt-acacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaactcactcatgtattgtttttgc 425  Q
    |||| |||| | |||||||||||||||||||||| ||||| ||||||||| |  ||||| ||||  ||| |||||| |||||| || ||||||||||  |    
T  7130134 cttagtttttatacatgcgtgacttaagtcacgctgcgtgagttaactcacgctggaatgaacacttgcatgagtttactcacgcaagtattgttttgcc 7130233  T
Q  426 atattcacaatgtttttgca 445  Q
    ||||||||||||||||||||    
T  7130234 atattcacaatgtttttgca 7130253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 445 - 512
Target Start/End: Original strand, 36330330 - 36330397
Alignment:
Q  445 aaaatgcagtgtgtgaaaaaattagtggcaaccatgaagcttttctcttcattagtctatacgtgttg 512  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  36330330 aaaatgcagtgtgtgaaaaaattaatggcaaccatgaagcttttctcttcattagtctatacttgttg 36330397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 445 - 512
Target Start/End: Original strand, 36323484 - 36323551
Alignment:
Q  445 aaaatgcagtgtgtgaaaaaattagtggcaaccatgaagcttttctcttcattagtctatacgtgttg 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||    
T  36323484 aaaatgcagtgtgtgaaaaaattagtggcaaccatgaagcttttctcttgattggtctctacttgttg 36323551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 375
Target Start/End: Complemental strand, 17944910 - 17944828
Alignment:
Q  293 ttagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacgcagcgtgggttaactca 375  Q
    ||||||||||||| |||||||||| ||||  ||||||||||||||||||| ||||||||||| |||| || || |||||||||    
T  17944910 ttagttaactaacacatgtgtaaaacaaacgtgacttaattttacacatgtgtgacttaagtaacgctgcatgagttaactca 17944828  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 441
Target Start/End: Complemental strand, 39872228 - 39872120
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaactcactcatgtattgtttttgcatattc 431  Q
    ||||||||||| |||||||||||||||| || || |||||||||   || ||||||||  | ||||||||||||||  |  ||||||||||| |||||||    
T  39872228 ttttacacatgtgtgacttaagtcacgctgcatgagttaactcacacagaaattaacatttacgtgagttaactcatgcgggtattgttttt-catattc 39872130  T
Q  432 acaatgtttt 441  Q
    ||||||||||    
T  39872129 acaatgtttt 39872120  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 35348635 - 35348703
Alignment:
Q  291 cattagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacgc 359  Q
    ||||| |||| ||| |||| ||||||||||| || | ||||||||| ||||||||||||||||||||||    
T  35348635 cattatttaattaatgcatatgtaaatcaaacataatttaattttatacatgcgtgacttaagtcacgc 35348703  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 445
Target Start/End: Complemental strand, 7130635 - 7130581
Alignment:
Q  391 ctgcgtgagttaactcactcatgtattgtttttgcatattcacaatgtttttgca 445  Q
    |||| ||||||||||||| || ||||||||||  |||||||||||||||||||||    
T  7130635 ctgcatgagttaactcacgcaagtattgttttgtcatattcacaatgtttttgca 7130581  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 375
Target Start/End: Original strand, 1797709 - 1797792
Alignment:
Q  293 ttagttaactaacgcatgtgtaaatcaaatatgacttaatttt-acacatgcgtgacttaagtcacgcagcgtgggttaactca 375  Q
    ||||||||||||||||  ||||||   || ||||| ||||||| ||||||| |||||||||||||||| ||||  |||||||||    
T  1797709 ttagttaactaacgcagatgtaaaattaacatgacataatttttacacatgtgtgacttaagtcacgctgcgtaagttaactca 1797792  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 375
Target Start/End: Complemental strand, 7130702 - 7130619
Alignment:
Q  293 ttagttaactaacgcatgtgtaaatcaaatatgactta-attttacacatgcgtgacttaagtcacgcagcgtgggttaactca 375  Q
    |||||||||||||||| |||||||  | | | ||||||  |||||| ||||||||||||||||||||| || || |||||||||    
T  7130702 ttagttaactaacgcaagtgtaaaaaataaacgacttagtttttacgcatgcgtgacttaagtcacgctgcatgagttaactca 7130619  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 43693765 - 43693703
Alignment:
Q  227 agaattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtcctt 289  Q
    ||||||||||||||||||||| |  |||  |||||| |||| || ||||||||||||||||||    
T  43693765 agaattttgctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgtcctt 43693703  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 375
Target Start/End: Complemental strand, 33220736 - 33220703
Alignment:
Q  342 gcgtgacttaagtcacgcagcgtgggttaactca 375  Q
    |||||||||||||||||||||||| |||||||||    
T  33220736 gcgtgacttaagtcacgcagcgtgagttaactca 33220703  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 45156415 - 45156358
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaaca 389  Q
    |||||||||||||||||||||||||||| || || |||| |||| |  ||||||||||    
T  45156415 ttttacacatgcgtgacttaagtcacgctgcttgagttatctcacgctggaattaaca 45156358  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 376
Target Start/End: Original strand, 42431682 - 42431726
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactcat 376  Q
    ||||||||||||||||||||||||| || || || ||||||||||    
T  42431682 ttttacacatgcgtgacttaagtcatgctgcatgagttaactcat 42431726  T

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Target: scaffold0007 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 297 - 375
Target Start/End: Original strand, 186921 - 186999
Alignment:
Q  297 ttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacgcagcgtgggttaactca 375  Q
    |||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||  || || |||||||||    
T  186921 ttaactaacgtatgtgtaaatcaaacatgacttaattttacacatgtgtgacttaagtcacgttgcatgagttaactca 186999  T

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Target: scaffold0007; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 187479 - 187419
Alignment:
Q  294 tagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagt 354  Q
    |||||||||||||||||||||||||||| |||| || ||||||||||||| ||||||||||    
T  187479 tagttaactaacgcatgtgtaaatcaaacatgattttattttacacatgcatgacttaagt 187419  T

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Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 39708348 - 39708282
Alignment:
Q  293 ttagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacgc 359  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||| ||||    
T  39708348 ttagttaactaacgcatgtgtaaatcaaatgtgacttaattttatacatgcatgacttaagttacgc 39708282  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 316
Target Start/End: Original strand, 51170929 - 51171011
Alignment:
Q  233 ttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgcatgtgtaaa 316  Q
    ||||||||||||| | |||||||||||||| |||| |||||| |||||||||||| | | |||||||||||| ||| |||||||    
T  51170929 ttgctcttcacccagcatttttcactcgcg-cctgcagtcatcccaaaaatgtccatgcgttagttaactaatgcaagtgtaaa 51171011  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 375
Target Start/End: Original strand, 53038858 - 53038938
Alignment:
Q  293 ttagttaactaacgcatgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacgcagcgtgggttaactca 375  Q
    |||||||||||||||||||||||| ||||   || ||||||||||| ||| |||||||||||||||| || || |||||||||    
T  53038858 ttagttaactaacgcatgtgtaaaacaaac--gaattaattttacaaatgtgtgacttaagtcacgccgcatgagttaactca 53038938  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 332 - 414
Target Start/End: Complemental strand, 16280991 - 16280909
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaactcactcatgt 414  Q
    |||||||| ||||||||||||||||||| ||||| ||||||||| |  | ||||||||  || |||||||||||||| |||||    
T  16280991 ttttacacttgcgtgacttaagtcacgccgcgtgagttaactcacgccgaaattaacacttgggtgagttaactcacgcatgt 16280909  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 316
Target Start/End: Complemental strand, 7790057 - 7789968
Alignment:
Q  227 agaattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgcatgtgtaaa 316  Q
    |||||||| |||||| || || | |||||  |||||||||| || ||| ||||||||| |||||| |||||||||||||||| |||||||    
T  7790057 agaattttactcttctccatgcacttttcgttcgcgtcctgcagccatcccaaaaatgcccttacgttagttaactaacgcaggtgtaaa 7789968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 445
Target Start/End: Complemental strand, 36754138 - 36754085
Alignment:
Q  392 tgcgtgagttaactcactcatgtattgtttttgcatattcacaatgtttttgca 445  Q
    ||||||||||||||||| || ||||||||||  |||||||||||||||||||||    
T  36754138 tgcgtgagttaactcacgcaagtattgttttgccatattcacaatgtttttgca 36754085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 359
Target Start/End: Original strand, 45003331 - 45003413
Alignment:
Q  279 aaaatgtccttacattagttaactaacgcatgtgtaaatcaa-atatgacttaatttt-acacatgcgtgacttaagtcacgc 359  Q
    |||||| |||| |||||||||||||||| | ||||||| | | | ||||||||||||| ||||||||||||||||| ||||||    
T  45003331 aaaatgcccttgcattagttaactaacggaagtgtaaaactatacatgacttaatttttacacatgcgtgacttaaatcacgc 45003413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 53831428 - 53831362
Alignment:
Q  309 tgtgtaaatcaaatatgacttaattttacacatgcgtgacttaagtcacgcagcgtgggttaactca 375  Q
    ||||||||||||| |||| ||||||||| |||||| ||||||||||||||  || || |||||||||    
T  53831428 tgtgtaaatcaaacatgatttaattttatacatgcatgacttaagtcacgttgcatgagttaactca 53831362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 25227438 - 25227358
Alignment:
Q  228 gaattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgca 308  Q
    ||||| |||||||| ||||| | ||||| ||||||||||| || ||| | |||||| ||||||| ||| ||||||||||||    
T  25227438 gaattctgctcttccccctgcacttttcgctcgcgtcctgcagccatcctaaaaatatccttacgttacttaactaacgca 25227358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 25226739 - 25226828
Alignment:
Q  227 agaattttgctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgcatgtgtaaa 316  Q
    |||||| |||||||| ||||| | || || ||| || |||| || ||| || ||||||| ||||| |||||||||||||||| |||||||    
T  25226739 agaattatgctcttccccctgcacttgtcgctcacgccctgcagccatcccgaaaatgttcttacgttagttaactaacgcaagtgtaaa 25226828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 438
Target Start/End: Original strand, 16280575 - 16280631
Alignment:
Q  382 aattaacaactgcgtgagttaactcactcatgtattgtttttgcatattcacaatgt 438  Q
    ||||||||  ||||||||||||||||| |||||  || |||||||| ||||||||||    
T  16280575 aattaacacttgcgtgagttaactcacgcatgttatgcttttgcattttcacaatgt 16280631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 36370 - 36289
Alignment:
Q  235 gctcttcaccctgtatttttcactcgcgtcctgtagtcatgccaaaaatgtccttacattagttaactaacgcatgtgtaaa 316  Q
    ||||||||||| | | ||||||||||||||||| || ||| ||||||||| |||| | |||||||||||||||| |||||||    
T  36370 gctcttcacccagcacttttcactcgcgtcctgcagccatcccaaaaatgcccttgcgttagttaactaacgcaagtgtaaa 36289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 332 - 407
Target Start/End: Complemental strand, 36229 - 36154
Alignment:
Q  332 ttttacacatgcgtgacttaagtcacgcagcgtgggttaactcatgtaggaattaacaactgcgtgagttaactca 407  Q
    |||||||| | ||||||||||||||||| ||||| | ||||||| |  ||||||||||  ||||||||||||||||    
T  36229 ttttacacttacgtgacttaagtcacgctgcgtgagctaactcacgctggaattaacacgtgcgtgagttaactca 36154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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