View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1077_low_1 (Length: 1084)

Name: NF1077_low_1
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1077_low_1
NF1077_low_1
[»] chr4 (2 HSPs)
chr4 (295-1006)||(25850505-25851217)
chr4 (16-267)||(25850211-25850461)
[»] scaffold0026 (2 HSPs)
scaffold0026 (295-1006)||(98560-99238)
scaffold0026 (16-267)||(99282-99533)


Alignment Details
Target: chr4 (Bit Score: 586; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 295 - 1006
Target Start/End: Original strand, 25850505 - 25851217
Alignment:
Q  295 aagagaaagaatagaataatcgtatcatactttaacattgatttcttcacgtagnnnnnnnnnnnnnnnnnnnnnncttatcttcactcaaattttctct 394  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||                      ||||||||||||||||||||||||    
T  25850505 aagagaaagaatagaataatggtatcatactttaacattgatttcttcacgtagaaaaaagtaaaatttttaaaaacttatcttcactcaaattttctct 25850604  T
Q  395 tctcatttttgctttctctcaaatatgcaaactaactgaatgataggtagtcttttagggacctgaattgcgtgcagttacaatcataagaaacaatgtg 494  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25850605 tctcatttttgctttctctcaaatatgtaaactaactgaatgataggtagtcttttagggacctgaattgcgtgcagttacaatcatgagaaacaatgtg 25850704  T
Q  495 caaagaggtaggtccattctcacagagggaagtcatagacaacagagaaggtcacatatttgcttactcgtatgaacgtaagacatttgattttgacaac 594  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25850705 caaagaggtaggtccattctcagagagggaagtcatagacaacagagaaggtcacatatttgcttactcgtatgaacgtaagacatttgattttgacaac 25850804  T
Q  595 gttgctcttgactactaagcaatgcatgcattcaagcgaatctcagatgaaatttcctcccatatttcaaaaataaactatcagctacatcacttaccta 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25850805 gttgctcttgactactaagcaatgcatgcattcaagcgaatctcaaatgaaattttctcccatatttcaaaaataaactatcagctacatcacttaccta 25850904  T
Q  695 aatatcgaccattaatcatgccaatcactcagctgctgcaataaaatcaaccaccgatatag-nnnnnnnaataacatatcaacaaaatttaaaacataa 793  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  25850905 aatatcgaccattaatcatgccaatcactcagctgctgcaataaaatcaaccaccgatatagttttttttaataacatatcaacaaaatttaaaacataa 25851004  T
Q  794 aataaagggcaaaggagtgaaatgatatagttcttaaccacatccatagtttatatcaggtgttgcagcaacagctgaaaatggaatttcaactctctct 893  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25851005 aataaagggcaaaggagtgaaatgatatagttcttaaccacatccatagtttatatcaggtgttgcagcaacagctgaaaatggaatttcaactctctct 25851104  T
Q  894 ttcacaagacatcgagcctcgccattttccagcaccaaaactctaccaggtggacactgtccatcacccttattttcactggtagatctctcattctcat 993  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25851105 ttcacaagacatcgagcctccccattttccagcaccaaaactctaccaggtggacactgtccatcacccttattttcactggtagatctcccattctcat 25851204  T
Q  994 tttctagtctgtg 1006  Q
    |||||||||||||    
T  25851205 tttctagtctgtg 25851217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 25850211 - 25850461
Alignment:
Q  16 aatagttgatgttgtagtttgctttgttacggtttttatagtgagattcattgtttgaaatttaagatgatgtttgccctttcgtgtcaatccggacgaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25850211 aatagttgatgttgtagtttgctttgttacggtttttatagtgagattcattgtttgaaatttaagatgatgtttgccctttcgtgtcaatccggacgaa 25850310  T
Q  116 ttatttaattggaaatttgtcaggctatgattttgccaagaaaaagnnnnnnnnnnnnnnnnnnaagaaaaacaattaatttgctttctttctnnnnnnn 215  Q
    |||||||||||||||||||||||||||||||||| |||||||||||                  || |||||||||||||||| |||||||||           
T  25850311 ttatttaattggaaatttgtcaggctatgatttttccaagaaaaagttttttttttttttttttaaaaaaaacaattaatttgttttctttct-aaaaaa 25850409  T
Q  216 ntacttttaatattcacaatatataaatataacgataaattaaattacttgg 267  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25850410 ctacttttaatattcacaatatataaatataacgataaattaaattacttgg 25850461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 295 - 1006
Target Start/End: Complemental strand, 99238 - 98560
Alignment:
Q  295 aagagaaagaatagaataatcgtatcatactttaacattgatttcttcacgtagnnnnnnnnnnnnnnnnnnnnnncttatcttcactcaaattttctct 394  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||                      ||||||||||||||||||||||||    
T  99238 aagagaaagaatagaataatggtatcatactttaacattgatttcttcacgtagaaaaaagtaaaatttttaaaaacttatcttcactcaaattttctct 99139  T
Q  395 tctcatttttgctttctctcaaatatgcaaactaactgaatgataggtagtcttttagggacctgaattgcgtgcagttacaatcataagaaacaatgtg 494  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  99138 tctcatttttgctttctctcaaatatgtaaactaactgaatgataggtagtattttagggacctgaattgcgtgcagttacaatcatgagaaagaatgtg 99039  T
Q  495 caaagaggtaggtccattctcacagagggaagtcatagacaacagagaaggtcacatatttgcttactcgtatgaacgtaagacatttgattttgacaac 594  Q
    |||||||                  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  99038 caaagag------------------agggaggtcatagacaacagagaaggtcacatatttgcttactcgtatgaacgtaagacatttgattttgac--- 98960  T
Q  595 gttgctcttgactactaagcaatgcatgcattcaagcgaatctcagatgaaatttcctcccatatttcaaaaataaactatcagctacatcacttaccta 694  Q
                ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  98959 ------------tactaagcaatgcatgcattcaagcgaatctcagatgaaattttctcccatatttcaaaaataaactatcagctacatcacttaccta 98872  T
Q  695 aatatcgaccattaatcatgccaatcactcagctgctgcaataaaatcaaccaccgatatagnnnnnnnaataacatatcaacaaaatttaaaacataaa 794  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  98871 aatatcgaccattaatcatgccaatcactcagctgctacaataaaatcaaccaccgatatagtttttttaataacatatcaacaaaatttaaaacataaa 98772  T
Q  795 ataaagggcaaaggagtgaaatgatatagttcttaaccacatccatagtttatatcaggtgttgcagcaacagctgaaaatggaatttcaactctctctt 894  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  98771 ataaagggcaaaggagtgaaatgatatagttcttaaccacatccatagtttatatcaggtgttgcagcaacagctgaaaatggaatttcaactctctctt 98672  T
Q  895 tcacaagacatcgagcctcgccattttccagcaccaaaactctaccaggtggacactgtccatcacccttattttcactggtagatctctcattctcatt 994  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  98671 tcacaagacatcgagcctcgccattttccagcaccaaaactctaccaggtggacactgtccatcacccttattttcactggtagatctcccattctcatt 98572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 150; E-Value: 1e-78
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 99533 - 99282
Alignment:
Q  16 aatagttgatgttgtagtttgctttgttacggtttttatagtgagattcattgtttgaaatttaagatgatgtttgccctttcgtgtcaatccggacgaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  99533 aatagttgatgttgtagtttgctttgttacggtttttatagtgagattcattgtttaaaatttaagatgatgtttgccctttcgtgtcaatccggacgaa 99434  T
Q  116 ttatttaattggaaatttgtcaggctatgattttgccaagaaaaag-nnnnnnnnnnnnnnnnnnaagaaaaacaattaatttgctttctttctnnnnnn 214  Q
    |||||||||||||||||||||||||||||||||| |||||||||||                   ||||||||||||||||||| |||||||||          
T  99433 ttatttaattggaaatttgtcaggctatgatttttccaagaaaaagtttttttttttttttttttaagaaaaacaattaatttgttttctttct-aaaaa 99335  T
Q  215 nntacttttaatattcacaatatataaatataacgataaattaaattacttgg 267  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  99334 actacttttaatattcacaatatataaatataacgataaattaaattacttgg 99282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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