View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1077_low_10 (Length: 505)

Name: NF1077_low_10
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1077_low_10
NF1077_low_10
[»] chr6 (11 HSPs)
chr6 (113-389)||(21150697-21150974)
chr6 (109-312)||(33726502-33726708)
chr6 (31-111)||(33726344-33726424)
chr6 (35-85)||(21150642-21150692)
chr6 (147-268)||(21140308-21140431)
chr6 (29-72)||(33714265-33714308)
chr6 (31-92)||(21241737-21241798)
chr6 (32-92)||(21286911-21286971)
chr6 (166-268)||(21233312-21233415)
chr6 (393-436)||(785445-785488)
chr6 (393-436)||(16766723-16766766)
[»] chr1 (5 HSPs)
chr1 (393-436)||(48547975-48548018)
chr1 (393-436)||(6332696-6332739)
chr1 (393-436)||(47989523-47989566)
chr1 (393-438)||(6612161-6612206)
chr1 (391-436)||(18556444-18556489)
[»] chr7 (6 HSPs)
chr7 (392-436)||(7438732-7438776)
chr7 (393-436)||(24339668-24339711)
chr7 (394-436)||(18039025-18039067)
chr7 (393-434)||(11272576-11272617)
chr7 (391-436)||(26033449-26033494)
chr7 (392-436)||(21560529-21560573)
[»] scaffold0044 (1 HSPs)
scaffold0044 (393-436)||(53206-53249)
[»] chr8 (1 HSPs)
chr8 (393-436)||(22652002-22652045)
[»] chr5 (1 HSPs)
chr5 (393-436)||(21542056-21542099)
[»] chr4 (2 HSPs)
chr4 (386-436)||(24613684-24613734)
chr4 (395-436)||(28084548-28084589)
[»] scaffold0016 (1 HSPs)
scaffold0016 (130-170)||(53912-53952)
[»] chr2 (1 HSPs)
chr2 (386-434)||(4882679-4882727)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 7e-84; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 113 - 389
Target Start/End: Original strand, 21150697 - 21150974
Alignment:
Q  113 caagaaaacactgaatatgtggctgatggtgttgttcctaatagggatacaatacttaaagattatgatataacagctgaacctatcatgaatcgaaaga 212  Q
    |||||||||||||||||||||||||| | ||| | |||||| ||||||| |||||||||||||  || |||||||||||||||||| |||||||||||||    
T  21150697 caagaaaacactgaatatgtggctgacgatgtagctcctaacagggatataatacttaaagatcctggtataacagctgaacctattatgaatcgaaaga 21150796  T
Q  213 gcctagaggatcataaaaccgtcatctcccaccaaaaagtacaggatcaacttgaagatgtagaacttgttatcgagaaatttattcattattacttaat 312  Q
    |||||||||||||||||||| ||||||||||| |||| ||||||||||||||| |||||||| ||||| |||| ||||||| ||| |||| ||| |||||    
T  21150797 gcctagaggatcataaaaccatcatctcccacaaaaatgtacaggatcaacttcaagatgtaaaacttattatggagaaatgtatccattgttatttaat 21150896  T
Q  313 caagtcattgcactatttatcat-ttttcagttcgagatgatatatgttgcaccgacacattgaaggcgtgttacgtg 389  Q
     | || ||||||| ||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  21150897 aatgttattgcaccatttatcatattttcagttcgagatgatatatgttgcactaacacattgaaggcgtgttccgtg 21150974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 109 - 312
Target Start/End: Original strand, 33726502 - 33726708
Alignment:
Q  109 ggatcaagaaaacactgaatatgtggctgatggtgttgttcctaata---gggatacaatacttaaagattatgatataacagctgaacctatcatgaat 205  Q
    |||||||||| | ||||||  ||||||||||| ||| | ||||| ||   | |||||||||||||| |||| |||||||| ||||||||||||  |||||    
T  33726502 ggatcaagaagaaactgaaactgtggctgatgatgtagctcctagtactagtgatacaatacttaaggattctgatataaaagctgaacctattgtgaat 33726601  T
Q  206 cgaaagagcctagaggatcataaaaccgtcatctcccaccaaaaagtacaggatcaacttgaagatgtagaacttgttatcgagaaatttattcattatt 305  Q
    |||||||||| ||||||||||||||||| |||||||| | ||||| ||||||| ||||||||||| ||| ||||| |||| ||||||||||||||| |||    
T  33726602 cgaaagagccaagaggatcataaaaccgacatctcccccaaaaaactacaggaacaacttgaagaggtaaaacttattatggagaaatttattcatcatt 33726701  T
Q  306 acttaat 312  Q
    |||||||    
T  33726702 acttaat 33726708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 33726344 - 33726424
Alignment:
Q  31 actacctctacaaataatgagcctgtcaaagagaatgcttctgatattcatgaagtggatccttctccttctcccaaagga 111  Q
    ||||||||| ||||||||||||| ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||    
T  33726344 actacctctccaaataatgagcccgtcaaagagaaggcttcagatattaatgaagtggatccttctccttctcccaaagga 33726424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 21150642 - 21150692
Alignment:
Q  35 cctctacaaataatgagcctgtcaaagagaatgcttctgatattcatgaag 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21150642 cctctacaaataatgagcctgtcaaagagaatgcttctgatattcatgaag 21150692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 147 - 268
Target Start/End: Original strand, 21140308 - 21140431
Alignment:
Q  147 ttcctaatagggatacaatacttaaa-gattatgatataacagctgaacctatcatgaatcgaaagagcctagaggatcataaaaccgtcatct--ccca 243  Q
    |||||||||| ||||||||||||||| |||| |||| ||| ||||||| |||||  |||||||||||||| |||| |||||||||| |||||||  ||||    
T  21140308 ttcctaatagtgatacaatacttaaaagattctgatttaaaagctgaaactatcgcgaatcgaaagagccaagagtatcataaaactgtcatcttaccca 21140407  T
Q  244 ccaaaaagtacaggatcaacttgaa 268  Q
      |||||||| ||||||||||||||    
T  21140408 -aaaaaagtaaaggatcaacttgaa 21140431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 33714265 - 33714308
Alignment:
Q  29 caactacctctacaaataatgagcctgtcaaagagaatgcttct 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33714265 caactacctctacaaataatgagcctgtcaaagagaatgcttct 33714308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 21241798 - 21241737
Alignment:
Q  31 actacctctacaaataatgagcctgtcaaagagaatgcttctgatattcatgaagtggatcc 92  Q
    ||||||||| ||||| ||||  ||||||||||||||||||||||||||||||||||| ||||    
T  21241798 actacctctgcaaattatgactctgtcaaagagaatgcttctgatattcatgaagtgtatcc 21241737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 21286911 - 21286971
Alignment:
Q  32 ctacctctacaaataatgagcctgtcaaagagaatgcttctgatattcatgaagtggatcc 92  Q
    |||||||| ||||| ||||  |||||| |||||||||||||||||||||||||||||||||    
T  21286911 ctacctctgcaaattatgactctgtcatagagaatgcttctgatattcatgaagtggatcc 21286971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 166 - 268
Target Start/End: Original strand, 21233312 - 21233415
Alignment:
Q  166 acttaaagattatgatataacagctgaacctatcatgaatcgaaagagcctagaggatcataaaaccgtcatc-tcccaccaaaaagtacaggatcaact 264  Q
    ||||||||||| | |||||| || |||| ||||| ||||||| ||||| | |||| |||||||||| ||| || |||| | |||||||| ||||||||||    
T  21233312 acttaaagattcttatataaaagttgaaactatcgtgaatcgtaagagacaagagtatcataaaactgtcgtcttcccccaaaaaagtaaaggatcaact 21233411  T
Q  265 tgaa 268  Q
    ||||    
T  21233412 tgaa 21233415  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 436
Target Start/End: Original strand, 785445 - 785488
Alignment:
Q  393 gacaccgacacggcaccgatacttgtaattacattgaattatgt 436  Q
    |||||||||||| |||||| |||||| |||||||||||||||||    
T  785445 gacaccgacacgacaccgacacttgtgattacattgaattatgt 785488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 16766766 - 16766723
Alignment:
Q  393 gacaccgacacggcaccgatacttgtaattacattgaattatgt 436  Q
    |||||||||||| |||||| ||||||||||||| ||||||||||    
T  16766766 gacaccgacacgacaccgacacttgtaattacactgaattatgt 16766723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 393 - 436
Target Start/End: Original strand, 48547975 - 48548018
Alignment:
Q  393 gacaccgacacggcaccgatacttgtaattacattgaattatgt 436  Q
    |||||||||||| |||| ||||||||||||||||||||||||||    
T  48547975 gacaccgacacgacaccaatacttgtaattacattgaattatgt 48548018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 6332739 - 6332696
Alignment:
Q  393 gacaccgacacggcaccgatacttgtaattacattgaattatgt 436  Q
    |||||| ||||| |||||||||||||||||||| ||||||||||    
T  6332739 gacaccaacacgacaccgatacttgtaattacactgaattatgt 6332696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 47989566 - 47989523
Alignment:
Q  393 gacaccgacacggcaccgatacttgtaattacattgaattatgt 436  Q
    |||||||||||| |||||| ||||||||||||| ||||||||||    
T  47989566 gacaccgacacgacaccgacacttgtaattacactgaattatgt 47989523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 6612161 - 6612206
Alignment:
Q  393 gacaccgacacggcaccgatacttgtaattacattgaattatgtaa 438  Q
    |||| ||||||| |||||| ||||||||||||| ||||||||||||    
T  6612161 gacatcgacacgacaccgacacttgtaattacactgaattatgtaa 6612206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 18556444 - 18556489
Alignment:
Q  391 ctgacaccgacacggcaccgatacttgtaattacattgaattatgt 436  Q
    ||||||||| |||| |||| ||||||||||||||||| ||||||||    
T  18556444 ctgacaccgtcacgacaccaatacttgtaattacattaaattatgt 18556489  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 436
Target Start/End: Complemental strand, 7438776 - 7438732
Alignment:
Q  392 tgacaccgacacggcaccgatacttgtaattacattgaattatgt 436  Q
    ||||||||||| | |||||| ||||||||||||||||||||||||    
T  7438776 tgacaccgacatgacaccgacacttgtaattacattgaattatgt 7438732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 24339711 - 24339668
Alignment:
Q  393 gacaccgacacggcaccgatacttgtaattacattgaattatgt 436  Q
    |||||||||||| |||||| ||||||||||||| ||||||||||    
T  24339711 gacaccgacacgacaccgacacttgtaattacactgaattatgt 24339668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 436
Target Start/End: Complemental strand, 18039067 - 18039025
Alignment:
Q  394 acaccgacacggcaccgatacttgtaattacattgaattatgt 436  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||    
T  18039067 acaccgacacgacaccgacacttgtaattacactgaattatgt 18039025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 434
Target Start/End: Original strand, 11272576 - 11272617
Alignment:
Q  393 gacaccgacacggcaccgatacttgtaattacattgaattat 434  Q
    |||||||||||| |||||| ||||||||||||| ||||||||    
T  11272576 gacaccgacacgacaccgacacttgtaattacactgaattat 11272617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 26033449 - 26033494
Alignment:
Q  391 ctgacaccgacacggcaccgatacttgtaattacattgaattatgt 436  Q
    ||||||||||||||  ||||| ||||||||||||| ||||||||||    
T  26033449 ctgacaccgacacgagaccgacacttgtaattacactgaattatgt 26033494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 436
Target Start/End: Complemental strand, 21560573 - 21560529
Alignment:
Q  392 tgacaccgacacggcaccgatacttgtaattacattgaattatgt 436  Q
    ||||||||| ||| |||||| ||||||||||||| ||||||||||    
T  21560573 tgacaccgatacgacaccgacacttgtaattacactgaattatgt 21560529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 53249 - 53206
Alignment:
Q  393 gacaccgacacggcaccgatacttgtaattacattgaattatgt 436  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||    
T  53249 gacaccgacacggcaccgacacttataattacactgaattatgt 53206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 22652045 - 22652002
Alignment:
Q  393 gacaccgacacggcaccgatacttgtaattacattgaattatgt 436  Q
    |||||||||||| |||||| ||||||||||| ||||||||||||    
T  22652045 gacaccgacacgacaccgacacttgtaattatattgaattatgt 22652002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 21542099 - 21542056
Alignment:
Q  393 gacaccgacacggcaccgatacttgtaattacattgaattatgt 436  Q
    |||||||||||| |||||| ||||||||||||| ||||||||||    
T  21542099 gacaccgacacgacaccgacacttgtaattacactgaattatgt 21542056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 436
Target Start/End: Original strand, 24613684 - 24613734
Alignment:
Q  386 cgtggctgacaccgacacggcaccgatacttgtaattacattgaattatgt 436  Q
    |||| |||||||||||| | |||||| ||||||| ||||||||||||||||    
T  24613684 cgtgtctgacaccgacatgacaccgacacttgtacttacattgaattatgt 24613734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 28084589 - 28084548
Alignment:
Q  395 caccgacacggcaccgatacttgtaattacattgaattatgt 436  Q
    |||||||||| ||| || ||||||||||||||||||||||||    
T  28084589 caccgacacgacacagacacttgtaattacattgaattatgt 28084548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 53952 - 53912
Alignment:
Q  130 tgtggctgatggtgttgttcctaatagggatacaatactta 170  Q
    ||||||||||| ||||| ||||||||| |||||||||||||    
T  53952 tgtggctgatgatgttgctcctaatagtgatacaatactta 53912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 434
Target Start/End: Original strand, 4882679 - 4882727
Alignment:
Q  386 cgtggctgacaccgacacggcaccgatacttgtaattacattgaattat 434  Q
    |||| |||||||||||||| || ||| ||||||||||||| ||||||||    
T  4882679 cgtgtctgacaccgacacgacatcgacacttgtaattacactgaattat 4882727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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