View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_11 (Length: 480)
Name: NF1077_low_11
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 15 - 451
Target Start/End: Original strand, 42990598 - 42991034
Alignment:
| Q |
15 |
tatgctgattggagctatgatagttagctccttgatagctacatgttgtgcaaatttctaccaagattttgatctaacatggggtgatcaccgtgctaag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42990598 |
tatgctgattggagctatgatagttagctccttgatagctacatgttgtgcaaatttctaccaagattttgatctaacatggggcgatcaccgtgctaag |
42990697 |
T |
|
| Q |
115 |
atattcaacggtggtcagcttctttcgctttctctcgacaaagtctccggctctggcttccagtccaagaaagagtacttattcggtagaattgatatgc |
214 |
Q |
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| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42990698 |
acattcaacggtggtcagcttctttcactttctctcgacaaagtctccggctctggcttccagtccaagaaagagtacttattcggtagaattgatatgc |
42990797 |
T |
|
| Q |
215 |
aactcaaattggttgctggaaactctgctggaaccgtcactgcttactatgtacgtagtacttttttccatctaaattcattcaaatcaaactcatacaa |
314 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42990798 |
aactcaaactggttgctggaaactctgctggaaccgtcactgcttactatgtacgtagtacttttttccatct-aattcattcaaatcaaactcatacaa |
42990896 |
T |
|
| Q |
315 |
tttgattcttttcttgtcttcttcacattatatattatattccttcgttgtttctttttcgaaagcaactttaattaacatacatagc-tcttcatgaaa |
413 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
42990897 |
tttgattcttttcttgccttcttcacattatatattatattccttcgttgtttctttttcaaaagcaactttaattaacatacatagcttcttcatgaag |
42990996 |
T |
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| Q |
414 |
tcaaaagtttttactagcattttgcttatggtgcagtt |
451 |
Q |
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| |||| |||||| |||||||| |||||||||||||| |
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| T |
42990997 |
ttgaaagcttttacgagcattttccttatggtgcagtt |
42991034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 69 - 263
Target Start/End: Original strand, 35016245 - 35016439
Alignment:
| Q |
69 |
tttctaccaagattttgatctaacatggggtgatcaccgtgctaagatattcaacggtggtcagcttctttcgctttctctcgacaaagtctccggctct |
168 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| || ||||| || ||||||||||| |||||| |
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| T |
35016245 |
tttctaccaagactttgatctaacatggggtgataaccgtgctaagatattcaatggtggtcaacttctatcactttcccttgacaaagtctctggctct |
35016344 |
T |
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| Q |
169 |
ggcttccagtccaagaaagagtacttattcggtagaattgatatgcaactcaaattggttgctggaaactctgctggaaccgtcactgcttacta |
263 |
Q |
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| T |
35016345 |
ggcttcaaatcaaagagagagtacctatttgggagaattgatatgcagcttaagcttgttgctggcaactctgctggcactgtcactgcttacta |
35016439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 38219167 - 38218909
Alignment:
| Q |
13 |
aatatgctgattggagctatgatagttagctccttgatagctacatgttgtgcaaatttctaccaagattttgatctaacatggggtgatcaccgtgcta |
112 |
Q |
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|||||||||||||||| ||||||| ||||||||||| |||||||||||| ||| || ||| ||||||| ||||||||||| |||||||| |||||||||| |
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| T |
38219167 |
aatatgctgattggagttatgataattagctccttggtagctacatgttctgctaacttcaaccaagactttgatctaacttggggtgaccaccgtgcta |
38219068 |
T |
|
| Q |
113 |
agatattcaacggtggtcagcttctttcgctttctctcgacaaagtctccggctctggcttccagtccaagaaagagtacttattcggtagaattgatat |
212 |
Q |
| |
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|||||||||| |||||||| ||||| || |||||||| || ||| || |||||||||||||| |||||||||||||| ||||| |||||||||||||| |
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| T |
38219067 |
agatattcaatggtggtcaacttctatctctttctcttgataaaacttctggctctggcttccaatccaagaaagagtatttatttggtagaattgatat |
38218968 |
T |
|
| Q |
213 |
gcaactcaaattggttgctggaaactctgctggaaccgtcactgcttactatgtacgta |
271 |
Q |
| |
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|||||| ||| | ||||||||||| ||||||||||| || ||||||||||| ||||||| |
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| T |
38218967 |
gcaacttaaacttgttgctggaaattctgctggaactgttactgcttactacgtacgta |
38218909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 15 - 267
Target Start/End: Complemental strand, 38214944 - 38214692
Alignment:
| Q |
15 |
tatgctgattggagctatgatagttagctccttgatagctacatgttgtgcaaatttctaccaagattttgatctaacatggggtgatcaccgtgctaag |
114 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| |||||||||||| ||| || ||| ||||||| ||||||||||| |||||||| |||||||||||| |
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| T |
38214944 |
tatgctgattggagtcatgataattagctccttggtagctacatgttctgctaacttcaaccaagactttgatctaacttggggtgaccaccgtgctaag |
38214845 |
T |
|
| Q |
115 |
atattcaacggtggtcagcttctttcgctttctctcgacaaagtctccggctctggcttccagtccaagaaagagtacttattcggtagaattgatatgc |
214 |
Q |
| |
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|||||||| |||||||| ||||| || |||||||| || ||| || |||||||||||||| |||||||||||||| ||||| |||||||||||||||| |
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| T |
38214844 |
atattcaatggtggtcaacttctatctctttctcttgataaaacttctggctctggcttccaatccaagaaagagtatttatttggtagaattgatatgc |
38214745 |
T |
|
| Q |
215 |
aactcaaattggttgctggaaactctgctggaaccgtcactgcttactatgta |
267 |
Q |
| |
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|||| ||| | ||||||||||| ||||||||||| || ||||||||||||||| |
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| T |
38214744 |
aacttaaacttgttgctggaaattctgctggaactgttactgcttactatgta |
38214692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 267
Target Start/End: Original strand, 37188272 - 37188472
Alignment:
| Q |
67 |
aatttctaccaagattttgatctaacatggggtgatcaccgtgctaagatattcaacggtggtcagcttctttcgctttctctcgacaaagtctccggct |
166 |
Q |
| |
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||||| || ||||| |||||| |||||||||| ||| |||||||| ||| ||||| ||| || |||||| | | ||||| |||||| ||| |||| |
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| T |
37188272 |
aatttttatcaagactttgatataacatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatcctctggct |
37188371 |
T |
|
| Q |
167 |
ctggcttccagtccaagaaagagtacttattcggtagaattgatatgcaactcaaattggttgctggaaactctgctggaaccgtcactgcttactatgt |
266 |
Q |
| |
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|||| || || ||||| || || ||| | || || | |||||||||||| || ||| | ||| |||| ||||||||||| ||||||||||| || ||||| |
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| T |
37188372 |
ctggttttcaatccaaaaatgaatacctttttggcaaaattgatatgcagcttaaacttgttcctggcaactctgctggcaccgtcactgcctattatgt |
37188471 |
T |
|
| Q |
267 |
a |
267 |
Q |
| |
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| |
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| T |
37188472 |
a |
37188472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 53494776 - 53494838
Alignment:
| Q |
205 |
attgatatgcaactcaaattggttgctggaaactctgctggaaccgtcactgcttactatgta |
267 |
Q |
| |
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||||||||||| ||||| | || ||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
53494776 |
attgatatgcagctcaagcttgtacctggaaactctgcaggaacggtcactgcttactatgta |
53494838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 53501885 - 53501937
Alignment:
| Q |
205 |
attgatatgcaactcaaattggttgctggaaactctgctggaaccgtcactgc |
257 |
Q |
| |
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|||||||||||||||||| | || |||||||||||||||| || |||||||| |
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| T |
53501885 |
attgatatgcaactcaaacttgtccctggaaactctgctggcactgtcactgc |
53501937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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