View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_15 (Length: 432)
Name: NF1077_low_15
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 238 - 425
Target Start/End: Complemental strand, 9625021 - 9624834
Alignment:
| Q |
238 |
gagactaaagtacttaattagaagaaggttgttaaactgcaatgaggtgtgtttgagcttcaatcctcatctcctctttcattttccttatgaattcttc |
337 |
Q |
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| T |
9625021 |
gagactaaagcacttaattagaagaaggttgttaaactgcaataaggtgtgtttgagcttcaatcctcatctcctctttcattttccttatgaattcttc |
9624922 |
T |
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| Q |
338 |
aaattttctgtttagttcttctgtatttgctaattcttcatttgttgtcaatgttgtttcatctacttcatcatcatcagtataatct |
425 |
Q |
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| T |
9624921 |
aaattttctgtttagttcttctgtatttgctaattcttcatttgttgtcaatgttgtttcatctacttcatcatcatcagcataatct |
9624834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 29 - 165
Target Start/End: Complemental strand, 9625225 - 9625094
Alignment:
| Q |
29 |
aagaagttcaaacaatcctagaaagacagtaagagatcttaactctatattgcatataatactaattttaaaataacatgacataatttaaaagactaaa |
128 |
Q |
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| T |
9625225 |
aagaagttcaaacaatcctagaaaggcagtaggacc-----actctatattgcatattatactaattttaaaataacatgacataatttaaaagactaaa |
9625131 |
T |
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| Q |
129 |
aaggaaagaagatgctagaaggttatgtaatatatct |
165 |
Q |
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| T |
9625130 |
aaggaaagaagatgctagaaggttatgtaatatatct |
9625094 |
T |
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