View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1077_low_16 (Length: 425)
Name: NF1077_low_16
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 30 - 267
Target Start/End: Original strand, 7739754 - 7739993
Alignment:
| Q |
30 |
gttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcgttgcaagagaactctacatca |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
7739754 |
gttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagggtggctttgtcattggcgttgcaggagaactcaacatca |
7739853 |
T |
|
| Q |
130 |
tcagcatttgatgtggagaagtagattgaagaaaggaagagaagtgttaagtgcagtaggagaaacatgtttggagtagtcttcatcttaattttggagt |
229 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7739854 |
tcagcatttgatgtggagaagtagatggaagaaaggaagaggagtgtcaagtggagtaggagaaacttgtttggagtagtcttcatcttaattttggagt |
7739953 |
T |
|
| Q |
230 |
tttctt--taagtttaaaaaataagaagaggtggtttgag |
267 |
Q |
| |
|
||| || |||||| |||||||| |||||||||||||||| |
|
|
| T |
7739954 |
tttttttctaagttaaaaaaatatgaagaggtggtttgag |
7739993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 30 - 270
Target Start/End: Original strand, 7731596 - 7731835
Alignment:
| Q |
30 |
gttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcgttgcaagagaactctacatca |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
7731596 |
gttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagggtggctttgtcattggcgttgcaggagaactcaacatca |
7731695 |
T |
|
| Q |
130 |
tcagcatttgatgtggagaagtagattgaagaaaggaagagaagtgttaagtgcagtaggagaaacatgtttggagtagtcttcatcttaattttg-gag |
228 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7731696 |
tcagcatttgatgtggagaagtagatggaagaaaggaagaggagtgtcaagtggagtaggagaaacatgtttggagtagtcttcatcttaattttgagag |
7731795 |
T |
|
| Q |
229 |
ttttctttaagtttaaaaaataagaagaggtggtttgagctt |
270 |
Q |
| |
|
||| |||| | |||||||| ||||||||||||||||||| |
|
|
| T |
7731796 |
ttt--tttagttgaaaaaaatatgaagaggtggtttgagctt |
7731835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 30 - 232
Target Start/End: Original strand, 7727436 - 7727638
Alignment:
| Q |
30 |
gttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcgttgcaagagaactctacatca |
129 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| |
|
|
| T |
7727436 |
gttgtcccaatcggagaggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcattgcaggagaactcaacatca |
7727535 |
T |
|
| Q |
130 |
tcagcatttgatgtggagaagtagattgaagaaaggaagagaagtgttaagtgcagtaggagaaacatgtttggagtagtcttcatcttaattttggagt |
229 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
7727536 |
tcagcatttgatgtggagaagtagatggaagaaaggaagagaagtgttaagtggagtaggagaaacttgtttggaggagtcttcatcttaattttggagt |
7727635 |
T |
|
| Q |
230 |
ttt |
232 |
Q |
| |
|
||| |
|
|
| T |
7727636 |
ttt |
7727638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 46 - 279
Target Start/End: Original strand, 7699587 - 7699817
Alignment:
| Q |
46 |
aggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcgttgcaagagaactctacatcatcagcatttgatgtgg |
145 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||||||||||||| | ||||||||| | ||||||||| |||| || |||| || |||||| ||| |
|
|
| T |
7699587 |
aggcggcctttgggaccaccgaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaagaagtc---atcacttgcgtttgatttgg |
7699683 |
T |
|
| Q |
146 |
agaagtagattgaagaaaggaagagaagtgttaagtgcagtaggagaaacatgtttggagtagtcttcatcttaattttggagttttctttaagtttaaa |
245 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7699684 |
agaagtagatggaagaaaggaagagaagtgttaagtggagtaggagaaacatgtttggagaagtcttcatcttaattttggagttttccttaagtttaat |
7699783 |
T |
|
| Q |
246 |
aaataagaagaggtggtttgagcttgggttgaga |
279 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
7699784 |
aaataagaagaggtggtttgagtttgggttgaga |
7699817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 30 - 413
Target Start/End: Original strand, 7713916 - 7714262
Alignment:
| Q |
30 |
gttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcgttgcaagagaactctacatca |
129 |
Q |
| |
|
||||||||| ||| ||| |||||||| |||||||| ||||||||||||||||||||||| | ||||||||| | ||||||||| |||| | ||||| |
|
|
| T |
7713916 |
gttgtcccagtcgtcaagacggccgttagggccgccaaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaagaagt---catca |
7714012 |
T |
|
| Q |
130 |
tcagcatttgatgtggagaagtagattgaagaaaggaagagaagtgttaagtgcagtaggagaaacatgtttggagtagtcttcatcttaattttggagt |
229 |
Q |
| |
|
|| |||||| ||||||||||||| ||||||||||||| ||||||| | ||||| | |||||||||||||| ||||||||||||| |||| |
|
|
| T |
7714013 |
cttgcgtttgatttggagaagtagatggaagaaaggaagaagagtgttaggctgagtagcataaacatgtttggaggagtcttcatcttatatttg---- |
7714108 |
T |
|
| Q |
230 |
tttctttaagtttaaaaaataagaagaggtggtttgagcttgggttgagataatacttaagttgagatgacaagtatgattttccgacaagctatttata |
329 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
7714109 |
-------------aacaaataagaagagatggtttgagcttgggttgagat-----------------gacaagtatgattttcagacaagctatttata |
7714178 |
T |
|
| Q |
330 |
gaagattgaatgtacactaaaacaataattaatttaggatatggatttatttcggatcagttcaatccacatgggtcatatatt |
413 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7714179 |
gaaaattgaatgtacactaaaacaataattaatttaggatatggatttatttcggatcagttcaatccacatgggtcatatatt |
7714262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 52 - 276
Target Start/End: Complemental strand, 12907863 - 12907640
Alignment:
| Q |
52 |
ccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcgttgcaagagaactctacatcatcagcatttgatgtggagaagt |
151 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||| ||||| ||||||| || ||| || || || | ||| |||||| | ||||||| |
|
|
| T |
12907863 |
ccgttagggccgccgaaatggtctcttattttgaggagagcagctttatcattggggtggcaggataaatcg---tttgaagcgtttgatttagagaagt |
12907767 |
T |
|
| Q |
152 |
agattgaagaaaggaagagaagtgttaagtgcagtaggagaaacatgtttggagtagtcttcatcttaa-ttttggagtt-ttctttaagtttaaaaaat |
249 |
Q |
| |
|
| || |||| ||||||| |||||||| || ||||| ||||||||||| |||| |||||||||||||| |||||||||| || |||||||| |||| || |
|
|
| T |
12907766 |
atatgaaagagaggaagatgagtgttaactggagtagaagaaacatgttaggagaagtcttcatcttaatttttggagttcttttttaagttgaaaagat |
12907667 |
T |
|
| Q |
250 |
aagaagaggtggtttgagcttgggttg |
276 |
Q |
| |
|
| ||||| |||||| || |||||||| |
|
|
| T |
12907666 |
agtaagagatggtttaagattgggttg |
12907640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University