View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_19 (Length: 422)
Name: NF1077_low_19
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 100 - 408
Target Start/End: Original strand, 41281073 - 41281381
Alignment:
| Q |
100 |
ccaatttcttgaattacacaagaaaaacgttggaaccaactgcgagatgcttgctttagcccataaagtgacttgtggagtcgacaaactacattctccc |
199 |
Q |
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| T |
41281073 |
ccaatttcttgaattgcacaagaaaaacgttggaaccaactacgagatgcttgctttagcccataaagtgacttgtggagtcgacaaactacattctccc |
41281172 |
T |
|
| Q |
200 |
cctgtcgacaaaaacccggaggaggcatcatgtatacttcttcaaccaaatcgccgtgaagaaatgcattttgtacatccatttggtgtaaaggccaatt |
299 |
Q |
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| T |
41281173 |
cctgtcgacaaaaacccggaggaggcatcatgtatacttcttcaaccaaatcgccgtgaagaaatgcattttgtacatccatttggtgtaaaggccaatt |
41281272 |
T |
|
| Q |
300 |
tcgaactgcagcaacagctaataagcatcgaacagtggtcaattttgcaaccggagcaaaagtatccttataatcaatgccttcacgttgggttaaccct |
399 |
Q |
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| T |
41281273 |
tcgaattgcagcaacagctaataagcatcgaacagtggttaattttgcaaccggagcaaaagtatccttataatcaatgccttcacgttgggtgaaccct |
41281372 |
T |
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| Q |
400 |
ttggcaaca |
408 |
Q |
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| T |
41281373 |
ttggcaaca |
41281381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 278
Target Start/End: Complemental strand, 9675665 - 9675532
Alignment:
| Q |
145 |
gatgcttgctttagcccataaagtgacttgtggagtcgacaaactacattctccccctgtcgacaaaaacccggaggaggcatcatgtatacttcttcaa |
244 |
Q |
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| T |
9675665 |
gatgcttgtttgagtccataaagtgacttattgagccgacatacaacgttctccccctgtcggcgaagaccaggtggaggctccatgtacactaattcat |
9675566 |
T |
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| Q |
245 |
ccaaatcgccgtgaagaaatgcattttgtacatc |
278 |
Q |
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| T |
9675565 |
gcaaatcaccatgaagaaaggcattttgcacatc |
9675532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 47447029 - 47447109
Alignment:
| Q |
32 |
gttgcatcagccagtcaacacgtgtaagaatcaacaattcattcagagcacctaaaagaagcaatactccaatttcttgaa |
112 |
Q |
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| T |
47447029 |
gttgcatcagccagccaacacgtgtaagaatcaacaattcactcagagcacctaaaagaagcaatactccaatttcttgaa |
47447109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 278
Target Start/End: Complemental strand, 25068560 - 25068427
Alignment:
| Q |
145 |
gatgcttgctttagcccataaagtgacttgtggagtcgacaaactacattctccccctgtcgacaaaaacccggaggaggcatcatgtatacttcttcaa |
244 |
Q |
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| T |
25068560 |
gatgcttgtttgagtccataaagtgacttattgagccgacatacaacgttctccccctgtcggcgaagaccaggtggaggctccatgtacactaattcat |
25068461 |
T |
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| Q |
245 |
ccaaatcgccgtgaagaaatgcattttgtacatc |
278 |
Q |
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| T |
25068460 |
gcaaatcaccatgaagaaaggcattttgcacatc |
25068427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 5289992 - 5289948
Alignment:
| Q |
253 |
ccgtgaagaaatgcattttgtacatccatttggtgtaaaggccaa |
297 |
Q |
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| T |
5289992 |
ccgtgaagaaatgcatttttgacatccatttgatgtaacggccaa |
5289948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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