View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_23 (Length: 400)
Name: NF1077_low_23
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 55 - 280
Target Start/End: Complemental strand, 47447690 - 47447465
Alignment:
| Q |
55 |
tgtgagttcaataacgatgatgccattagtgttaaggttggggaaggtacttacaaaactgtaattattgatagtacggagtgcggaggatattcttagt |
154 |
Q |
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| T |
47447690 |
tgtgagttcactaacgatgatgccattagtgttaaggttggggaaggtacttacaaaactgtaattattgatagtacggagtgcggaggatattcttagt |
47447591 |
T |
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| Q |
155 |
atggatctgaagtggttaagcccccatgaagtaaggaaactttagagtgaatgggtttgctgtccgcaaaagcaagatccttctaagcaagatccacatc |
254 |
Q |
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| T |
47447590 |
atggatctgaagtggttaagcccccatgaagtaaggaaactttagagtgaatgggtttgctgtccgcaaaagcaagatccttctaagcaagatccacatc |
47447491 |
T |
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| Q |
255 |
agttgacttgattatattttattgtc |
280 |
Q |
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| T |
47447490 |
agttgacttgattatattttattgtc |
47447465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 298 - 382
Target Start/End: Complemental strand, 47447209 - 47447125
Alignment:
| Q |
298 |
catcatcaaattataagtgcaagattgtattgtcaacactgtcttcttagaaagatctgaagcggataaatgcagactttgcgaa |
382 |
Q |
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| T |
47447209 |
catcatcaaattataagtgcaagattgtattgtgaacactgtcttcttagaaagatatgaagcggataaatgcagactttgcgaa |
47447125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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