View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_25 (Length: 398)
Name: NF1077_low_25
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 53 - 387
Target Start/End: Complemental strand, 31652890 - 31652562
Alignment:
| Q |
53 |
agatagtattctacttagtcaatttaatattactgtaatattggtagttggttttacattagtgcattatgattctgtacgaatctactctgatgcaaca |
152 |
Q |
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| T |
31652890 |
agatactattctacttagtcaatttaatattactgtaatattggtagttggttttacattagtg--ttatgattctgtacgaatctactctgatgcaaca |
31652793 |
T |
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| Q |
153 |
tcaaaattatgaagagcataaacaatcattcttaagatcttttttgaattttaaatacgccaaacaataactttgataatttacctttgcacaaacatta |
252 |
Q |
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| T |
31652792 |
tcaaaattattaagagcataaacaatccttcttaagatcttttttgaattttaaatacgccaaacaatagctttgaccatttacctttgcacaaacatta |
31652693 |
T |
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| Q |
253 |
tgaaaagtgagatatattgttataagataaatagtaaaataatccttggactttccataaaaattaaaatcaatccttgttgtatataagaattgtctgt |
352 |
Q |
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| T |
31652692 |
tgaaaagtgagatatattgttataagataaatagtaaaataatccttggacattccataaaaattaaaatcaatccttgttgtatataataat----tgt |
31652597 |
T |
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| Q |
353 |
ctcccaaaagaaaactatagtttgtcggcgttcat |
387 |
Q |
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| T |
31652596 |
ctcccaaaagaaaactatagtttgtcggcgttcat |
31652562 |
T |
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