View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_27 (Length: 396)
Name: NF1077_low_27
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 10 - 367
Target Start/End: Complemental strand, 9915349 - 9914990
Alignment:
| Q |
10 |
aagaatatctaaaaatacattagggataaagagattcactcgtaaaatataca--gagacctcgtatttctagccgaatgccattatcaagacaaacttt |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
9915349 |
aagattatctaaaaatacattagggataaagagattcactcgtaaaatatacatagagacctcgtatttctagctgaatgccattgtcaagacaaacttt |
9915250 |
T |
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| Q |
108 |
taattggctccactaactcaagtaccgaatacgtttttgaagagaaaatttgatcgttcctagtcttccatatcgaccacaagaccgtgtgtcaattgac |
207 |
Q |
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| T |
9915249 |
taattggctccactaactcaagtaccgaatacgtttttgaagagaaaatttgatcgttcctagtcttccatatcgaccacaagaccgtgtgtcaattgac |
9915150 |
T |
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| Q |
208 |
attacacaatgtgagaaatataatgcaaattgacataaattgagaaatcattttgaaatgacaacacaatttaaccaaagatgtatcactttcgctcccg |
307 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9915149 |
attacacaatgtgaaaagtataatgcaaattgacataaattgagaaatcattttgaaatgacaacacaatttaaacaaagatgtatcactttcgctcccg |
9915050 |
T |
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| Q |
308 |
ttttttacacttttgatcttgacaagcagattaaggcaaacatatcccatttacataaac |
367 |
Q |
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| T |
9915049 |
ttttttacacttttgatcttgacaagcagattaaggcaaacatatcccatttacataaac |
9914990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 10 - 367
Target Start/End: Complemental strand, 9929014 - 9928655
Alignment:
| Q |
10 |
aagaatatctaaaaatacattagggataaagagattcactcgtaaaatataca--gagacctcgtatttctagccgaatgccattatcaagacaaacttt |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| |||||||||||||| |
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| T |
9929014 |
aagattatctaaaaatacattagggataaagagattcactcgtaaaatatacattgagacctcgactttctagctgaatgccattgtcaagacaaacttt |
9928915 |
T |
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| Q |
108 |
taattggctccactaactcaagtaccgaatacgtttttgaagagaaaatttgatcgttcctagtcttccatatcgaccacaagaccgtgtgtcaattgac |
207 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9928914 |
taattggcgccactaactcaagtatcgaatacgtttttgaagagaaaatttgattgttcctagtcttccatatcgaccacaagaccgtgtgttaattgac |
9928815 |
T |
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| Q |
208 |
attacacaatgtgagaaatataatgcaaattgacataaattgagaaatcattttgaaatgacaacacaatttaaccaaagatgtatcactttcgctcccg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9928814 |
attacacaatgtgagaaatataatgcaaattgacataaattgagaaatcattttgaaatgacaacacaatttaaccaaagatatatcactttcgctcccg |
9928715 |
T |
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| Q |
308 |
ttttttacacttttgatcttgacaagcagattaaggcaaacatatcccatttacataaac |
367 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
9928714 |
tttttgacacttttgatcttgacaagcaaattaaggcaaacatataccatttacataaac |
9928655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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