View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_29 (Length: 383)
Name: NF1077_low_29
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 121 - 355
Target Start/End: Original strand, 30191319 - 30191553
Alignment:
| Q |
121 |
ctctttgtttgattgctgccacagcattcactgcagagtatcttctctttaactttcactcagcaactcacaaaggcctagaaggctattatcatgtcct |
220 |
Q |
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| T |
30191319 |
ctctttgtttgattgctgccacagcattcactgcagagtatcttctctttaactttcactcagcaactcacaaaggcctagaaggctattatcatgtcct |
30191418 |
T |
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| Q |
221 |
cctcgccttcctgattggtctttgtattttatcttcaattgccggagccgttttaccaacatgtttcccagtcgatttatgtaagggcattggcataaca |
320 |
Q |
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| T |
30191419 |
cctcgccttcctgattggtctttgtattttatcttcaattgccggagccgttttaccaacatgtttcccagtcgatttatctaagggcattggcataaca |
30191518 |
T |
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| Q |
321 |
ctgcaaggaatctggttctatcagacagcttttgt |
355 |
Q |
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| T |
30191519 |
ctgcaaggaatctggttctatcagacagcttttgt |
30191553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 139 - 355
Target Start/End: Original strand, 30186539 - 30186755
Alignment:
| Q |
139 |
ccacagcattcactgcagagtatcttctctttaactttcactcagcaactcacaaaggcctagaaggctattatcatgtcctcctcgccttcctgattgg |
238 |
Q |
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| T |
30186539 |
ccacagcattcagtacagagtatattttattttactatcactcaacaacacacataggtctagaaggctattatcatatcctccttggctttctggttcg |
30186638 |
T |
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| Q |
239 |
tctttgtattttatcttcaattgccggagccgttttaccaacatgtttcccagtcgatttatgtaagggcattggcataacactgcaaggaatctggttc |
338 |
Q |
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| T |
30186639 |
tctttgcattttatctacaattgccggagcacttctcccgaccagttttccggtagatttatgtagtagcatcaccataacgctacaaggaatctggtta |
30186738 |
T |
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| Q |
339 |
tatcagacagcttttgt |
355 |
Q |
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| T |
30186739 |
tatcagacagcctttgt |
30186755 |
T |
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