View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_38 (Length: 327)
Name: NF1077_low_38
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 52 - 298
Target Start/End: Complemental strand, 37074278 - 37074032
Alignment:
| Q |
52 |
cacacgtccttgaaggaagaaattggtgcattgaggttcaaaattgagaaactagaatctgaatgtgaggtaaaaggaagcagggttaagtccttggaaa |
151 |
Q |
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| T |
37074278 |
cacacgtccttgaaggaagaaattggtgcattgaggttcaaaattgagaaactagaatctgaatgtgaggtaaaaggaagcagggttaagtccttggaaa |
37074179 |
T |
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| Q |
152 |
ttgaagtggaagcttttaagaagcaatctgaagggttccttatggaatatgatggtctcttgatagataatcagaatcttaggaaattgttggagtgtat |
251 |
Q |
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| T |
37074178 |
ttgaagtggaagcttttaagaagcaatctgaagggttccttatggaatatgatggtctcttgatagataatcagaatcttaggaaattgctggagtgtat |
37074079 |
T |
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| Q |
252 |
agaaaagagatcttcctatgttgatgataaaaacagtttgtgaaatt |
298 |
Q |
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| T |
37074078 |
agaaaagagatcttcctatgttgatgataaaaacagtttgtgaaatt |
37074032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 17429075 - 17429200
Alignment:
| Q |
106 |
gaatctgaatgtgaggtaaaaggaagcagggttaagtccttggaaattgaagtggaagcttttaagaagcaatctgaagggttccttatggaatatgatg |
205 |
Q |
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| T |
17429075 |
gaatctgaatgtgaggcgaaaggaaccaaggaaaagacattggaaactgaagtagaggctcttaaaaagcaatctgaggggttccttatggaatatgatc |
17429174 |
T |
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| Q |
206 |
gtctcttgatagataatcagaatctt |
231 |
Q |
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| T |
17429175 |
gtctcttggaagacaatcagaatctt |
17429200 |
T |
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