View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_40 (Length: 324)
Name: NF1077_low_40
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 30 - 312
Target Start/End: Original strand, 40005652 - 40005934
Alignment:
| Q |
30 |
ggaatctcactcttgtttgagctgctgttgttcttattcttcctcttgctgttgaagaaaagttttaaagtaaaccttgaattttgttgcctcgtccata |
129 |
Q |
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| T |
40005652 |
ggaatctcactcttgtttgagctgctgttgttcttcttcttcctcttgctgttgaagaaaagttttaaagtaaaccttgaattttgttgcctcgtccata |
40005751 |
T |
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| Q |
130 |
tttgattcttataggatcttcataacagtttcttcaatttttccctgtttgcttcaccaaggctttgaagtgaggctgagggccgagttcgttgtaaggc |
229 |
Q |
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| T |
40005752 |
tttgattcttataggatcttcagaacagtttcttcaatttttccctgtttgcttcaccaaggctttgaagtgaggctgagggccgagttcgttgtaaggc |
40005851 |
T |
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| Q |
230 |
tactttcgaaccttggattctgtagcctcgtgcatatttgattcttctaagatcttcagaacagttttttcgattcttccctt |
312 |
Q |
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| T |
40005852 |
tactttcgaaccttggattctgtagcctcgtgcatatttgattcttctaagatcttcagaacagttttttcgattcttccctt |
40005934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 305
Target Start/End: Complemental strand, 40006216 - 40006079
Alignment:
| Q |
177 |
tttgcttcaccaaggctttgaagtgaggctgag---------ggccgagttcgttgtaaggctactttcgaaccttggattctgtagcctcgtgcatatt |
267 |
Q |
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||||||||||||||||||||||||||||||||| || || |||||||| ||| |||||||||||||||||||| ||||||||| | |||||| |
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| T |
40006216 |
tttgcttcaccaaggctttgaagtgaggctgagataggttgaggtcgggttcgttggaagcctactttcgaaccttggattatgtagcctcatccatatt |
40006117 |
T |
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| Q |
268 |
tgattcttctaagatcttcagaacagttttttcgattc |
305 |
Q |
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| T |
40006116 |
tgattctagtgagatcttcagaacagtttcctcgattc |
40006079 |
T |
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