View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1077_low_42 (Length: 321)

Name: NF1077_low_42
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1077_low_42
NF1077_low_42
[»] chr2 (2 HSPs)
chr2 (82-170)||(43798228-43798317)
chr2 (109-170)||(10498659-10498720)
[»] chr1 (2 HSPs)
chr1 (82-170)||(10160104-10160193)
chr1 (112-170)||(9370715-9370773)
[»] chr5 (5 HSPs)
chr5 (111-169)||(18475936-18475994)
chr5 (111-169)||(30335463-30335521)
chr5 (111-169)||(30485480-30485538)
chr5 (109-168)||(29456518-29456577)
chr5 (120-170)||(11079873-11079923)
[»] chr4 (3 HSPs)
chr4 (120-170)||(53840448-53840498)
chr4 (111-164)||(14272431-14272484)
chr4 (120-170)||(13216572-13216622)
[»] chr8 (1 HSPs)
chr8 (109-170)||(37044359-37044420)
[»] chr6 (4 HSPs)
chr6 (111-169)||(67168-67226)
chr6 (120-170)||(6261821-6261871)
chr6 (124-170)||(11380015-11380061)
chr6 (124-170)||(14430023-14430069)
[»] scaffold0684 (1 HSPs)
scaffold0684 (124-169)||(4181-4226)
[»] scaffold0163 (1 HSPs)
scaffold0163 (124-169)||(3892-3937)
[»] chr3 (5 HSPs)
chr3 (109-170)||(25203035-25203096)
chr3 (115-170)||(25735246-25735301)
chr3 (111-170)||(30803684-30803742)
chr3 (120-170)||(49906994-49907044)
chr3 (124-168)||(4137255-4137299)


Alignment Details
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 170
Target Start/End: Complemental strand, 43798317 - 43798228
Alignment:
Q  82 ccgtccgtatgcatgagtatcata-taaaacatttgattcatctcttgtaacatatatgtaaagagatgttcttaaaacaattagtaatg 170  Q
    |||||||||||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43798317 ccgtccgtatgcatgagtatcatgctaaagcatttgattcatcttttgtaacatatatgtaaagagatgttcttaaaacaattagtaatg 43798228  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 10498659 - 10498720
Alignment:
Q  109 aacatttgattcatctcttgtaacatatatgtaaagagatgttcttaaaacaattagtaatg 170  Q
    |||||| ||||||||||||| ||| |||||  ||||||||||||||| ||||||||||||||    
T  10498659 aacattcgattcatctcttgcaacctatatagaaagagatgttcttagaacaattagtaatg 10498720  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 170
Target Start/End: Original strand, 10160104 - 10160193
Alignment:
Q  82 ccgtccgtatgcatgagtatcata-taaaacatttgattcatctcttgtaacatatatgtaaagagatgttcttaaaacaattagtaatg 170  Q
    |||||||||||||||||||||||  || |||||||||||||||||||||||| ||| |  ||||||||||||||| || |||||||||||    
T  10160104 ccgtccgtatgcatgagtatcatgctacaacatttgattcatctcttgtaacctatgtagaaagagatgttcttagaataattagtaatg 10160193  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 9370773 - 9370715
Alignment:
Q  112 atttgattcatctcttgtaacatatatgtaaagagatgttcttaaaacaattagtaatg 170  Q
    |||||||| ||||| ||||||||||||  ||||||| ||||||| || |||||||||||    
T  9370773 atttgattaatctcctgtaacatatatagaaagagacgttcttagaataattagtaatg 9370715  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 18475936 - 18475994
Alignment:
Q  111 catttgattcatctcttgtaacatatatgtaaagagatgttcttaaaacaattagtaat 169  Q
    |||||||||||||||||||||| |||||  ||||||||||||||| |||||||||||||    
T  18475936 catttgattcatctcttgtaacctatatagaaagagatgttcttagaacaattagtaat 18475994  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 30335463 - 30335521
Alignment:
Q  111 catttgattcatctcttgtaacatatatgtaaagagatgttcttaaaacaattagtaat 169  Q
    |||||||||||||||||||||| |||||  |||| ||| |||||| |||||||||||||    
T  30335463 catttgattcatctcttgtaacctatatagaaagggatattcttagaacaattagtaat 30335521  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 30485538 - 30485480
Alignment:
Q  111 catttgattcatctcttgtaacatatatgtaaagagatgttcttaaaacaattagtaat 169  Q
    |||||||||||||||||||||  |||||  |||| |||||||||| |||||||||||||    
T  30485538 catttgattcatctcttgtaatctatatagaaagggatgttcttagaacaattagtaat 30485480  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 29456518 - 29456577
Alignment:
Q  109 aacatttgattcatctcttgtaacatatatgtaaagagatgttcttaaaacaattagtaa 168  Q
    ||||||| ||||||||| |||||| |||||  ||| |||||||||||||| |||||||||    
T  29456518 aacattttattcatctcctgtaacctatatagaaatagatgttcttaaaataattagtaa 29456577  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 11079873 - 11079923
Alignment:
Q  120 catctcttgtaacatatatgtaaagagatgttcttaaaacaattagtaatg 170  Q
    ||||||||||||| |||||  ||||||||||||||| |||||||| |||||    
T  11079873 catctcttgtaacctatataaaaagagatgttcttagaacaattaataatg 11079923  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 53840448 - 53840498
Alignment:
Q  120 catctcttgtaacatatatgtaaagagatgttcttaaaacaattagtaatg 170  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  53840448 catctcttgtaacctatatataaagagatgttcttaaaacaattagtaatg 53840498  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 14272431 - 14272484
Alignment:
Q  111 catttgattcatctcttgtaacatatatgtaaagagatgttcttaaaacaatta 164  Q
    |||||||||||||||||||||| |||||  |||||| |||||||| ||||||||    
T  14272431 catttgattcatctcttgtaacctatatagaaagagttgttcttataacaatta 14272484  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 13216622 - 13216572
Alignment:
Q  120 catctcttgtaacatatatgtaaagagatgttcttaaaacaattagtaatg 170  Q
    |||||||||| || |||||  ||||||||||||||| ||||||||||||||    
T  13216622 catctcttgtgacctatatagaaagagatgttcttagaacaattagtaatg 13216572  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 37044359 - 37044420
Alignment:
Q  109 aacatttgattcatctcttgtaacatatatgtaaagagatgttcttaaaacaattagtaatg 170  Q
    |||||||||||||||||||||||| |||||  ||||||||||||||| |||| |||||||||    
T  37044359 aacatttgattcatctcttgtaacctatattgaaagagatgttcttagaacagttagtaatg 37044420  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 67168 - 67226
Alignment:
Q  111 catttgattcatctcttgtaacatatatgtaaagagatgttcttaaaacaattagtaat 169  Q
    |||||||||||||||||||||| |||||  | | ||||||||||| |||||||||||||    
T  67168 catttgattcatctcttgtaacctatatagacatagatgttcttagaacaattagtaat 67226  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 6261821 - 6261871
Alignment:
Q  120 catctcttgtaacatatatgtaaagagatgttcttaaaacaattagtaatg 170  Q
    ||||||||||||| |||||  ||||||| ||||||||||||||||||||||    
T  6261821 catctcttgtaacctatatagaaagagaagttcttaaaacaattagtaatg 6261871  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 11380015 - 11380061
Alignment:
Q  124 tcttgtaacatatatgtaaagagatgttcttaaaacaattagtaatg 170  Q
    |||||||||||||||  |||| |||||||||||||||||||||||||    
T  11380015 tcttgtaacatatattgaaagtgatgttcttaaaacaattagtaatg 11380061  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 14430023 - 14430069
Alignment:
Q  124 tcttgtaacatatatgtaaagagatgttcttaaaacaattagtaatg 170  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||    
T  14430023 tcttgtaacgtatatagaaagagatgttcttaaaacaattagtaatg 14430069  T

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Target: scaffold0684 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 4226 - 4181
Alignment:
Q  124 tcttgtaacatatatgtaaagagatgttcttaaaacaattagtaat 169  Q
    |||||||||||||||  |||||||||||||||||| ||||||||||    
T  4226 tcttgtaacatatatagaaagagatgttcttaaaataattagtaat 4181  T

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Target: scaffold0163 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 3892 - 3937
Alignment:
Q  124 tcttgtaacatatatgtaaagagatgttcttaaaacaattagtaat 169  Q
    |||||||||||||||  |||||||||||||||||| ||||||||||    
T  3892 tcttgtaacatatatagaaagagatgttcttaaaataattagtaat 3937  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 25203035 - 25203096
Alignment:
Q  109 aacatttgattcatctcttgtaacatatatgtaaagagatgttcttaaaacaattagtaatg 170  Q
    |||| ||||||| ||||||||||| |||||  ||||||||||||||| || |||||||||||    
T  25203035 aacacttgattcttctcttgtaacttatatagaaagagatgttcttagaataattagtaatg 25203096  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 25735301 - 25735246
Alignment:
Q  115 tgattcatctcttgtaacatatatgtaaagagatgttcttaaaacaattagtaatg 170  Q
    |||||||||||||||||| |||||  ||||||||||||||  || |||||||||||    
T  25735301 tgattcatctcttgtaacttatatagaaagagatgttctttgaataattagtaatg 25735246  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 30803684 - 30803742
Alignment:
Q  111 catttgattcatctcttgtaacatatatgtaaagagatgttcttaaaacaattagtaatg 170  Q
    |||||||||||||||||||||| |||||  ||||||||| | ||| ||||||||||||||    
T  30803684 catttgattcatctcttgtaacctatatagaaagagatgct-ttagaacaattagtaatg 30803742  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 49906994 - 49907044
Alignment:
Q  120 catctcttgtaacatatatgtaaagagatgttcttaaaacaattagtaatg 170  Q
    ||||||| ||||| |||||  ||||||||||||||| ||||||||||||||    
T  49906994 catctctcgtaacctatatagaaagagatgttcttagaacaattagtaatg 49907044  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 4137255 - 4137299
Alignment:
Q  124 tcttgtaacatatatgtaaagagatgttcttaaaacaattagtaa 168  Q
    |||||||||||||||   |||||||||||||| ||||||||||||    
T  4137255 tcttgtaacatatatagtaagagatgttcttagaacaattagtaa 4137299  T

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