View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1077_low_43 (Length: 320)

Name: NF1077_low_43
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1077_low_43
NF1077_low_43
[»] chr6 (12 HSPs)
chr6 (37-286)||(13874763-13875012)
chr6 (38-286)||(13472460-13472708)
chr6 (38-286)||(14025635-14025883)
chr6 (39-289)||(14085022-14085272)
chr6 (38-286)||(13892467-13892715)
chr6 (66-286)||(13932730-13932950)
chr6 (48-243)||(14110840-14111035)
chr6 (48-283)||(14047694-14047929)
chr6 (48-286)||(14015514-14015754)
chr6 (169-286)||(13928824-13928941)
chr6 (48-241)||(13862338-13862531)
chr6 (38-156)||(13912177-13912295)


Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 37 - 286
Target Start/End: Complemental strand, 13875012 - 13874763
Alignment:
Q  37 cagaacctgtgagaaatggtggaatggagccttcaaattgatttgatgcaagagataaaaaagaacaatgattttttacatgaagattcggaattaatcc 136  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13875012 cagaacctctgagaaatggtggaatggagccttcaaattgatttgatgcaagagataaaaaagaacaatgattttttacatgaagattcggaattaatcc 13874913  T
Q  137 tttgagattgttgtatgaaatgttgattgtcttgcactcttgtgatgacagtttagcccaaaaccactcggcaacattatctgaaattccagaattagaa 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13874912 tttgagattgttgtatgaaatgttgattgtcttgcactcttgtgatgatagtttagcccaaaaccactcgggaacattatctgaaattccagaattagaa 13874813  T
Q  237 atatcaatatcctgaaagtgattttgtgtctgaatccattttggaaatgt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13874812 atatcaatatcctgaaagtgattttgtgtctgaatccattttggaaatgt 13874763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 38 - 286
Target Start/End: Complemental strand, 13472708 - 13472460
Alignment:
Q  38 agaacctgtgagaaatggtggaatggagccttcaaattgatttgatgcaagagataaaaaagaacaatgattttttacatgaagattcggaattaatcct 137  Q
    ||||||| | ||||||||||||||||| |||||||||| |||||||| |||| ||||||||||||||||||||||||| |||||||| ||||||||||||    
T  13472708 agaacctcttagaaatggtggaatggacccttcaaattcatttgatgaaagatataaaaaagaacaatgattttttacttgaagatttggaattaatcct 13472609  T
Q  138 ttgagattgttgtatgaaatgttgattgtcttgcactcttgtgatgacagtttagcccaaaaccactcggcaacattatctgaaattccagaattagaaa 237  Q
    ||||||||||| || |||||||||||| |   ||| ||||| ||||| ||||||| |||||||||||| | |||||||||||||||||||  ||||||||    
T  13472608 ttgagattgttataggaaatgttgattctagagcagtcttgggatgatagtttagaccaaaaccactctggaacattatctgaaattccaccattagaaa 13472509  T
Q  238 tatcaatatcctgaaagtgattttgtgtctgaatccattttggaaatgt 286  Q
    |||||| ||  || | ||  |||||||||||||||||||| ||||||||    
T  13472508 tatcaagattgtgcaggtatttttgtgtctgaatccatttgggaaatgt 13472460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 38 - 286
Target Start/End: Original strand, 14025635 - 14025883
Alignment:
Q  38 agaacctgtgagaaatggtggaatggagccttcaaattgatttgatgcaagagataaaaaagaacaatgattttttacatgaagattcggaattaatcct 137  Q
    ||||||| | |||||||||||||| |  |||||||||| |||||||| ||||||||||| ||||||| ||||||| || |||||||| ||||||||||||    
T  14025635 agaaccttttagaaatggtggaataggcccttcaaattcatttgatgaaagagataaaacagaacaacgatttttgacttgaagatttggaattaatcct 14025734  T
Q  138 ttgagattgttgtatgaaatgttgattgtcttgcactcttgtgatgacagtttagcccaaaaccactcggcaacattatctgaaattccagaattagaaa 237  Q
    |||||||| |||| ||||||||||||  | ||||||  ||||||||| |||||||||||||||||||| | ||||||||||||||||||||  || ||||    
T  14025735 ttgagattattgtttgaaatgttgatgttgttgcaccattgtgatgatagtttagcccaaaaccactctggaacattatctgaaattccagccttcgaaa 14025834  T
Q  238 tatcaatatcctgaaagtgattttgtgtctgaatccattttggaaatgt 286  Q
    |||||| |||||| | ||  |||||||||||||||||||| ||||||||    
T  14025835 tatcaagatcctgcaggtacttttgtgtctgaatccatttaggaaatgt 14025883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 39 - 289
Target Start/End: Original strand, 14085022 - 14085272
Alignment:
Q  39 gaacctgtgagaaatggtggaatggagccttcaaattgatttgatgcaagagataaaaaagaacaatgattttttacatgaagattcggaattaatcctt 138  Q
    |||||| | ||||||||||||||||  |||||||||| ||||||||  ||| ||||||||||||||| |||| |||  || |||||||||||| ||||||    
T  14085022 gaacctctaagaaatggtggaatgggaccttcaaattcatttgatgacagaaataaaaaagaacaataatttcttatgtggagattcggaattgatcctt 14085121  T
Q  139 tgagattgttgtatgaaatgttgattgtcttgcactcttgtgatgacagtttagcccaaaaccactcggcaacattatctgaaattccagaattagaaat 238  Q
    ||| ||||||||| |||| |||||||||| |||||||||||||||| ||||| |||||||||||||| | || ||||||||||| ||||| |||||||||    
T  14085122 tgaaattgttgtaagaaaggttgattgtcctgcactcttgtgatgatagttttgcccaaaaccactctggaatattatctgaaactccagcattagaaat 14085221  T
Q  239 atcaatatcctgaaagtgattttgtgtctgaatccattttggaaatgttga 289  Q
    ||||| ||   ||||||  |||||||||||||||||||| |||||||||||    
T  14085222 atcaagatatcgaaagtatttttgtgtctgaatccatttaggaaatgttga 14085272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 38 - 286
Target Start/End: Complemental strand, 13892715 - 13892467
Alignment:
Q  38 agaacctgtgagaaatggtggaatggagccttcaaattgatttgatgcaagagataaaaaagaacaatgattttttacatgaagattcggaattaatcct 137  Q
    ||||||| | |||||||||||||| |  |||||||||| |||||||| ||||||||||| |||||||| |||||| || |||||||| ||||||||||||    
T  13892715 agaaccttttagaaatggtggaataggcccttcaaattcatttgatgaaagagataaaatagaacaataatttttgacttgaagatttggaattaatcct 13892616  T
Q  138 ttgagattgttgtatgaaatgttgattgtcttgcactcttgtgatgacagtttagcccaaaaccactcggcaacattatctgaaattccagaattagaaa 237  Q
    |||||||| |||| ||||||||||||  |  ||||||||| | |||| | |||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  13892615 ttgagattattgtttgaaatgttgatgcttctgcactcttttaatgataatttagcccaaaaccactctggaacattatctgaaattccagcattagaaa 13892516  T
Q  238 tatcaatatcctgaaagtgattttgtgtctgaatccattttggaaatgt 286  Q
    |||||| ||  |||| ||| ||||||||||||||||| || ||||||||    
T  13892515 tatcaagattttgaatgtgtttttgtgtctgaatccagttaggaaatgt 13892467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 66 - 286
Target Start/End: Original strand, 13932730 - 13932950
Alignment:
Q  66 ccttcaaattgatttgatgcaagagataaaaaagaacaatgattttttacatgaagattcggaattaatcctttgagattgttgtatgaaatgttgattg 165  Q
    |||||||||| |||||||| ||||||||||| |||||| |||||||| || |||||||| |||||| | ||||||||||| |||| |||||| |||||      
T  13932730 ccttcaaattcatttgatgaaagagataaaagagaacagtgatttttgacttgaagatttggaattgaacctttgagattattgtttgaaatattgatgc 13932829  T
Q  166 tcttgcactcttgtgatgacagtttagcccaaaaccactcggcaacattatctgaaattccagaattagaaatatcaatatcctgaaagtgattttgtgt 265  Q
    | ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||||||||  || |||||||||| |||| | | ||  ||||||||    
T  13932830 tgttgcattcttgtgatgatagtttagcccaaaaccactctggaacattatctgaaattccagccttcgaaatatcaagatccagcaggtacttttgtgt 13932929  T
Q  266 ctgaatccattttggaaatgt 286  Q
    |||||||||||| ||||||||    
T  13932930 ctgaatccatttaggaaatgt 13932950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 48 - 243
Target Start/End: Original strand, 14110840 - 14111035
Alignment:
Q  48 agaaatggtggaatggagccttcaaattgatttgatgcaagagataaaaaagaacaatgattttttacatgaagattcggaattaatcctttgagattgt 147  Q
    ||||||||||||||||  |||||||||| |||| ||| ||||||||||  ||| |||| ||||||||| |||||||| ||||||| |||||||||||| |    
T  14110840 agaaatggtggaatgggcccttcaaattcatttaatgaaagagataaactagagcaataattttttacttgaagatttggaattattcctttgagattat 14110939  T
Q  148 tgtatgaaatgttgattgtcttgcactcttgtgatgacagtttagcccaaaaccactcggcaacattatctgaaattccagaattagaaatatcaa 243  Q
    ||| ||||| ||||||  || |||||| ||||||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||    
T  14110940 tgtttgaaacgttgatgctcctgcacttttgtgatgatagtttagcccaaaaccactccggaacattatctgaaattccagcattagaaatatcaa 14111035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 48 - 283
Target Start/End: Original strand, 14047694 - 14047929
Alignment:
Q  48 agaaatggtggaatggagccttcaaattgatttgatgcaagagataaaaaagaacaatgattttttacatgaagattcggaattaatcctttgagattgt 147  Q
    ||||| |||||| |||| |||||||||| |||||||| |||||||||||||||||| ||| ||||  | |||||||| |||||||||||||||||||| |    
T  14047694 agaaaaggtggagtggacccttcaaattcatttgatgaaagagataaaaaagaacattgacttttggcttgaagatttggaattaatcctttgagattat 14047793  T
Q  148 tgtatgaaatgttgattgtcttgcactcttgtgatgacagtttagcccaaaaccactcggcaacattatctgaaattccagaattagaaatatcaatatc 247  Q
    ||| | ||||||| ||  |  |||||||| ||||||| |||||||||||||||||||| | |||||||||||||||||||| ||| |||||||||| ||     
T  14047794 tgtttaaaatgttcatgttgctgcactctggtgatgatagtttagcccaaaaccactctggaacattatctgaaattccagcattcgaaatatcaagata 14047893  T
Q  248 ctgaaagtgattttgtgtctgaatccattttggaaa 283  Q
     || | ||  ||||||||| |||||||||| |||||    
T  14047894 atgcaggtatttttgtgtcagaatccatttaggaaa 14047929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 48 - 286
Target Start/End: Original strand, 14015514 - 14015754
Alignment:
Q  48 agaaatggtggaatggagccttcaaattgatttgatgcaagagata--aaaaagaacaatgattttttacatgaagattcggaattaatcctttgagatt 145  Q
    ||||||| |||||| |  |||||||||| |||||||| ||||||||  ||||| || ||| | |||| || |||||||| |||||| | |||||||||||    
T  14015514 agaaatgctggaataggcccttcaaattcatttgatgaaagagatataaaaaaaaaaaattaattttgacttgaagatttggaattgaacctttgagatt 14015613  T
Q  146 gttgtatgaaatgttgattgtcttgcactcttgtgatgacagtttagcccaaaaccactcggcaacattatctgaaattccagaattagaaatatcaata 245  Q
     |||| ||||||||||||    | ||||||||||||||| |||||||||||||||||||| | || ||||||||||||||||| ||| |||||||||| |    
T  14015614 attgtttgaaatgttgatgcggtagcactcttgtgatgatagtttagcccaaaaccactctggaatattatctgaaattccagcattcgaaatatcaaga 14015713  T
Q  246 tcctgaaagtgattttgtgtctgaatccattttggaaatgt 286  Q
    |  |||| ||| |||||||||||||||||||| ||||||||    
T  14015714 ttgtgaatgtgtttttgtgtctgaatccatttaggaaatgt 14015754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 169 - 286
Target Start/End: Original strand, 13928824 - 13928941
Alignment:
Q  169 tgcactcttgtgatgacagtttagcccaaaaccactcggcaacattatctgaaattccagaattagaaatatcaatatcctgaaagtgattttgtgtctg 268  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || | ||| ||| |||||||||||    
T  13928824 tgcactcttgtgatgatagtttagcccaaaaccactcgggaacattatctgaaattccagcattagaaatatcaagattcagaatgtgtttttgtgtctg 13928923  T
Q  269 aatccattttggaaatgt 286  Q
    ||||||||| ||||||||    
T  13928924 aatccatttaggaaatgt 13928941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 48 - 241
Target Start/End: Complemental strand, 13862531 - 13862338
Alignment:
Q  48 agaaatggtggaatggagccttcaaattgatttgatgcaagagataaaaaagaacaatgattttttacatgaagattcggaattaatcctttgagattgt 147  Q
    ||||||||||||||||  |||||||| | |||||||| ||||||||||| |||||| ||||||||||| |  | ||| |||||| ||||||| ||||| |    
T  13862531 agaaatggtggaatgggcccttcaaaatcatttgatgaaagagataaaagagaacagtgattttttacttttaaatttggaattgatcctttaagattat 13862432  T
Q  148 tgtatgaaatgttgattgtcttgcactcttgtgatgacagtttagcccaaaaccactcggcaacattatctgaaattccagaattagaaatatc 241  Q
    ||| ||||||||| ||||| ||||||  |||  |||| || ||| ||||||||||||| | |||||||||||||||| ||| ||||||||||||    
T  13862431 tgtttgaaatgtttattgtattgcacatttgcaatgatagattatcccaaaaccactcaggaacattatctgaaatttcagcattagaaatatc 13862338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 13912177 - 13912295
Alignment:
Q  38 agaacctgtgagaaatggtggaatggagccttcaaattgatttgatgcaagagataaaaaagaacaatgattttttacatgaagattcggaattaatcct 137  Q
    ||||||| ||||||||||||||||||  |||||||||| |||||||| ||| ||||||| ||||||| |||||||||| |||||||| |||||||| |||    
T  13912177 agaacctttgagaaatggtggaatgggcccttcaaattcatttgatgaaagtgataaaacagaacaaagattttttacttgaagatttggaattaagcct 13912276  T
Q  138 ttgagattgttgtatgaaa 156  Q
    |||||||| |||| |||||    
T  13912277 ttgagattattgtttgaaa 13912295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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