View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_49 (Length: 311)
Name: NF1077_low_49
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 28 - 298
Target Start/End: Complemental strand, 54012931 - 54012661
Alignment:
| Q |
28 |
cagatatcacaatcttcaccacactgaaaaggacaccaatttctgcctctttatgcctctctttgacgcattaggcaatactcttaacaaaaattcatgg |
127 |
Q |
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| T |
54012931 |
cagatatcacaatcttcaccacactgaaaaggacaccaatttctgcctctttatgcctctctttgacgcattaggcaatactcttaacaaaaattcatgg |
54012832 |
T |
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| Q |
128 |
acattacacgaaacattaagttcaggttcaggtaattaacttgtcctatgattaattcactattttcatctaaatattaataatccacattatgataata |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
54012831 |
acattacacgaaacattaagttcaggttcaggtaattaacttgtcctatgattaattcactattttcatctaaatactaataatccacattatgataata |
54012732 |
T |
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| Q |
228 |
aagttgtattgaatctttatcaatgcaggaaatggcactacggtaccacattttgttttcttggctcatat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
54012731 |
aagttgtattgaatctttatcaatgcaggaaatggcgctacggtaccacgctttgttttcttggctcatat |
54012661 |
T |
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