View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_5 (Length: 637)
Name: NF1077_low_5
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 55 - 619
Target Start/End: Complemental strand, 47447690 - 47447125
Alignment:
| Q |
55 |
tgtgagttcaataacgatgatgccattagtgttaaggttggggaaggtacttacaaaactgtaattattgatagtacggagtgcggaggatattcttagt |
154 |
Q |
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| T |
47447690 |
tgtgagttcactaacgatgatgccattagtgttaaggttggggaaggtacttacaaaactgtaattattgatagtacggagtgcggaggatattcttagt |
47447591 |
T |
|
| Q |
155 |
atggatctgaagtggttaagcccccatgaagtaaggaaactttagagtgaatgggtttgctgtccgcaaaagcaagatccttctaagcaagatccacatc |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47447590 |
atggatctgaagtggttaagcccccatgaagtaaggaaactttagagtgaatgggtttgctgtccgcaaaagcaagatccttctaagcaagatccacatc |
47447491 |
T |
|
| Q |
255 |
agttgacttgattatattttattgtcataccattgatgaaaaaggtaggctgagcacctattttggtgcgatggtataaggcaaatggattacaaagttt |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47447490 |
agttgacttgattatattttattgtcataccattgatgaaaaaggtaggctgagcacctattttggtgcgatggtataaggcaaatggattacaaagttt |
47447391 |
T |
|
| Q |
355 |
atggcaatgtgttgatatttgatgtaacatatgaaacgaacaaatatcattgccccttagttgtgttttttggagttactaagcataatcacagttttat |
454 |
Q |
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| T |
47447390 |
atgacgatgtgttgatatttgatgtaacatatgaaacgaacaaatatcattgccccttagttgtgttttttggagttactaagcataatcacagttttat |
47447291 |
T |
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| Q |
455 |
atttactggattcgggtgagaatgggatggaattgaccc-tttcatcttcaagttgttgaaaaccacctttttcacgccgtcatcatcaaattataagtg |
553 |
Q |
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| T |
47447290 |
atttactggatttgggtgagaatgggatgaaattgacccttttcatcttcaagttgttgaaaaccacctttttcacgccgtcatcatcaaattataagtg |
47447191 |
T |
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| Q |
554 |
caagattgtattgtcaacactgtcttcttagaaagatctgaagcggataaatgcagactttgcgaa |
619 |
Q |
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| T |
47447190 |
caagattgtattgtgaacactgtcttcttagaaagatatgaagcggataaatgcagactttgcgaa |
47447125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 398
Target Start/End: Original strand, 31111331 - 31111434
Alignment:
| Q |
296 |
aaggtaggct-gagcacctattttggtgcgatggtataaggcaaatggattacaaagtttatggcaatgtgttgatatttgatgtaacatatgaaacgaa |
394 |
Q |
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| T |
31111331 |
aaggtaggcttgaacacctgttttggtgcgacggtattagccaaatggattatggtgcttatggtgatgtgttggcatttgatgcaacatatggaacgaa |
31111430 |
T |
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| Q |
395 |
caaa |
398 |
Q |
| |
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|||| |
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| T |
31111431 |
caaa |
31111434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 271 - 458
Target Start/End: Complemental strand, 21977155 - 21976967
Alignment:
| Q |
271 |
ttttattgtcataccattgatgaaaaaggtaggct-gagcacctattttggtgcgatggtataaggcaaatggattacaaagtttatggcaatgtgttga |
369 |
Q |
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|||||||| || |||||||| | | |||||||||| | ||||| |||||||| ||||||||||| ||||||||||||| ||| |||| |||||||| |
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| T |
21977155 |
ttttattgccacaccattgacggagaaggtaggcttgtacaccttttttggtgtgatggtataagagaaatggattacaaggttcatggtgatgtgttgg |
21977056 |
T |
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| Q |
370 |
tatttgatgtaacatatgaaacgaacaaatatcattgccccttagttgtgttttttggagttactaagcataatcacagttttatattt |
458 |
Q |
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| T |
21977055 |
catttgatgcaacatatggaacgaacaaatatcaatgtcccttagtggtgttttctgaagttaataaccataatcataatgttatattt |
21976967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 317 - 425
Target Start/End: Original strand, 21975811 - 21975919
Alignment:
| Q |
317 |
ttggtgcgatggtataaggcaaatggattacaaagtttatggcaatgtgttgatatttgatgtaacatatgaaacgaacaaatatcattgccccttagtt |
416 |
Q |
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|||||| ||||||||||| |||||||||| |||||||||||| || ||||| |||||||| |||||||||||||||||||||||| || ||||||| |
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| T |
21975811 |
ttggtgtgatggtataagccaaatggattgcaaagtttatggtgatatgttggcatttgatgcaacatatgaaacgaacaaatatcactggtccttagtg |
21975910 |
T |
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| Q |
417 |
gtgtttttt |
425 |
Q |
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| T |
21975911 |
gtgtttttt |
21975919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 296 - 463
Target Start/End: Original strand, 16080282 - 16080450
Alignment:
| Q |
296 |
aaggtaggct-gagcacctattttggtgcgatggtataaggcaaatggattacaaagtttatggcaatgtgttgatatttgatgtaacatatgaaacgaa |
394 |
Q |
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|||||||||| || ||||| ||||||||||| ||||| || ||||||||||| || ||||| |||||||| |||||||| |||||||| |||||| |
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| T |
16080282 |
aaggtaggcttgaacacctgttttggtgcgacggtattagccaaatggattatggtgtctatggtgatgtgttggcatttgatgcaacatatggaacgaa |
16080381 |
T |
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| Q |
395 |
caaatatcattgccccttagttgtgttttttggagttactaagcataatcacagttttatatttactgg |
463 |
Q |
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|||||||||||| |||||||| ||||||| ||| |||| ||| |||||||| | | |||||||| |||| |
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| T |
16080382 |
caaatatcattgtcccttagtggtgttttctggcgttaataaccataatcataatgttatatttgctgg |
16080450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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