View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_50 (Length: 310)
Name: NF1077_low_50
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 28 - 297
Target Start/End: Complemental strand, 54012931 - 54012661
Alignment:
| Q |
28 |
cagatatcacaatcttcaccacactgaaaaggacaccaatttctgcctctttatgcctctctttgacgcattaggcaatactcttaacaaaaattcatgg |
127 |
Q |
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| T |
54012931 |
cagatatcacaatcttcaccacactgaaaaggacaccaatttctgcctctttatgcctctctttgacgcattaggcaatactcttaacaaaaattcatgg |
54012832 |
T |
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| Q |
128 |
acattacacgaaacattaagttcaggttcaggtaattaacttgtcctatga-tactccactattttcatctaaatattaataatccacattatgataata |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
54012831 |
acattacacgaaacattaagttcaggttcaggtaattaacttgtcctatgattaattcactattttcatctaaatactaataatccacattatgataata |
54012732 |
T |
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| Q |
227 |
aagttgtattgaatctttatcaatgcaggaaatggcactacggtaccacattttgttttcttggctcatat |
297 |
Q |
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| T |
54012731 |
aagttgtattgaatctttatcaatgcaggaaatggcgctacggtaccacgctttgttttcttggctcatat |
54012661 |
T |
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