View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_53 (Length: 299)
Name: NF1077_low_53
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 47151694 - 47151456
Alignment:
| Q |
15 |
tctcctaaactaggctcaacgctgttgaaaacatgaaccattgtagcagttgccaaaacagaaggtagataactcataaacttagaatctgcaatgttgt |
114 |
Q |
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| T |
47151694 |
tctcctaaactaggctcaacgctgttgaaaacatgaaccattgtagcagttgccaaaacagaaggtagataactcataaacttagaatctgcaatgttgt |
47151595 |
T |
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| Q |
115 |
gacaaaacctaagatgagaaacagaacacaaaaactttctcaagatcgaagatatactgtaaatttacctgatctaatgacagagagaagaacaccttca |
214 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47151594 |
gacaaaacctaagatgagaaacagaacataaaaactttctcaagatcgaagatatactgaaaatttacctgatctaatgacagagagaagaacaccttca |
47151495 |
T |
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| Q |
215 |
catctcttaaggaactcccaacaaattagatgatctttc |
253 |
Q |
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||||||||||| |||||||||||||||||||| |||||| |
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| T |
47151494 |
catctcttaagaaactcccaacaaattagatggtctttc |
47151456 |
T |
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