View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_57 (Length: 279)
Name: NF1077_low_57
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 2 - 249
Target Start/End: Complemental strand, 29908340 - 29908092
Alignment:
| Q |
2 |
atcctctataaatagtcctggatttctttctgtttctgacaactcatctcattcttttctttttccgatttccgatctgctatggtttaaatcannnnnn |
101 |
Q |
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| T |
29908340 |
atcctctataaatagtcctggatttctttctgtttctcacaactcatctcattcttttctttttccgatttccaatctgctctggtttaaatcttttttt |
29908241 |
T |
|
| Q |
102 |
n-aatgtcttctgcaatgttgaaaggtgttaggtttgataacaagggtcttaggtctggtcacagaggtatcgcagctttgatttggtgtctgatgttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
29908240 |
ttaatgtcttctgcaatgttgaaaggtgttaggtttgataacaagggtcttaggtctggtcacagaggtatcgcagctttgatttgctgtctgatgttct |
29908141 |
T |
|
| Q |
201 |
tcctggaaaggagtcttggggattcaagcttcatgttgttcgtctgtgg |
249 |
Q |
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|||||||| ||||||||| |||||||||||| |||||||||| ||||| |
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| T |
29908140 |
tcctggaagagagtcttggagattcaagcttcgtgttgttcgtttgtgg |
29908092 |
T |
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