View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_58 (Length: 278)
Name: NF1077_low_58
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 2827913 - 2827665
Alignment:
| Q |
1 |
tttgttagtcctaagaaagaaacaagcataatcatccatccttggtcaccatattttgctgtgaagtaaaatgcagggatcaatagtaatctagaaagaa |
100 |
Q |
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| T |
2827913 |
tttgttagtcctaagaaagaaacaagcataatcatccatccttggtcaccatattttgctgtgaagtaaaatgcagggatcaatagtaatctagaaagaa |
2827814 |
T |
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| Q |
101 |
ctgcagcgagtaagcactttcttgactccaacttcaggaatttgaggaggggaatatatctggatgttaaatccgagacattaaacaccgcgatcaaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2827813 |
ttgcagcgagtaagcactttcttgactccaacttcaggaatttgaggaggggaatatatctggatattaaatccgagacattaaacaccgcgatcaaaac |
2827714 |
T |
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| Q |
201 |
cagcgcgtacctaaaaagaactaccaaatgtgtcatcatgtaataaaac |
249 |
Q |
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| T |
2827713 |
cagcgcgtacctaaaaagaactaccaaatgtgtcatcatgtaataaaac |
2827665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 2820582 - 2820333
Alignment:
| Q |
1 |
tttgttagtcctaagaaagaaacaagcataatcatccatccttggtcaccatattttgctgtgaagtaaaatgcagggatcaatagtaatctagaaagaa |
100 |
Q |
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||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
2820582 |
tttgttagtcctaagaacgaaacgagcatgatcatccatccttggtcaccatattttgctgtgaagtaaaatgctgggatcagtagtaatctagaaagaa |
2820483 |
T |
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| Q |
101 |
ctgcagcgagtaagcactttcttgactccaacttcaggaatttgaggaggggaatat-atctggatgttaaatccgagacattaaacaccgcgatcaaaa |
199 |
Q |
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| T |
2820482 |
ttgctgcgagtaagcactttcttgattccaacttcaggaatttgaggaggggaatatgatctggatattaaatccgagacattaaacactgcgatcaaaa |
2820383 |
T |
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| Q |
200 |
ccagcgcgtacctaaaaagaactaccaaatgtgtcatcatgtaataaaac |
249 |
Q |
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| T |
2820382 |
ccagcgtgtacctaaaaagaactaccaaatgtgtcatcattcaataaaac |
2820333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 2814805 - 2814915
Alignment:
| Q |
31 |
atcatccatccttggtcaccatattttgctgtgaagtaaaatgcagggatcaatagtaatctagaaagaactgcagcgagtaagcactttcttgactcca |
130 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||| |||||||| | |||||||||||| ||| | | ||| | |||||| || |||| |
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| T |
2814805 |
atcatccaaccttggtcaccatattttgctgcaaagtaaaatgctgggatcaacaagaatctagaaagagtagcaaccaataatccctttctagattcca |
2814904 |
T |
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| Q |
131 |
acttcaggaat |
141 |
Q |
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||||||||||| |
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| T |
2814905 |
acttcaggaat |
2814915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 159
Target Start/End: Original strand, 2820590 - 2820712
Alignment:
| Q |
35 |
tccatccttggtcaccatattttgctgtgaagtaaaatgcagggatcaatagtaatctagaaagaactgcagcgagtaagcactttcttgactccaactt |
134 |
Q |
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|||| |||||||||||||||||||||||||||| |||| |||||||| | |||||||||||| ||| | | ||||| |||||| || |||||||| |
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| T |
2820590 |
tccaaccttggtcaccatattttgctgtgaagt--aatgttgggatcaacaagaatctagaaagagtggcaaccaataagccctttctggattccaactt |
2820687 |
T |
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| Q |
135 |
caggaatttgaggaggggaatatat |
159 |
Q |
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| T |
2820688 |
caggaatttgatgagcagaatatat |
2820712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 2835823 - 2835755
Alignment:
| Q |
31 |
atcatccatccttggtcaccatattttgctgtgaagtaaaatgcagggatcaatagtaatctagaaaga |
99 |
Q |
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||||||||||||||||||||||||||||| || ||||| ||||| || | ||| | |||||||||||| |
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| T |
2835823 |
atcatccatccttggtcaccatattttgcagtaaagtagaatgctggaaccaacaagaatctagaaaga |
2835755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 1428569 - 1428414
Alignment:
| Q |
4 |
gttagtcctaagaaagaaacaagcataatcatccatccttggtcaccatattttgctgtgaagtaaaatgcagggatcaatagtaatctagaaagaactg |
103 |
Q |
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|||||||| ||| |||| ||||| | |||||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| | |
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| T |
1428569 |
gttagtcccaagtaagatacaagtaggatcatccaaccttggtcaccatattttgctgtgaagtaaaatgctgggatcaacaagaatctagaaagagtag |
1428470 |
T |
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| Q |
104 |
cagcgagtaagcactttcttgactccaacttcaggaatttgaggaggggaatatat |
159 |
Q |
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| T |
1428469 |
caaccaataaaccctttctagattccaatttcaagaatttgatgaggggaatatat |
1428414 |
T |
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