View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_60 (Length: 272)
Name: NF1077_low_60
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 49 - 252
Target Start/End: Complemental strand, 10446195 - 10445993
Alignment:
| Q |
49 |
agttgttacttcatattcaataattacagacttatgaaagaaactagaatgctaagttaattattggcttgcttattatcatcatttgcgtaaaagaaat |
148 |
Q |
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| T |
10446195 |
agttgttacttcatattcaataattacagacttatgaaagaaactagaatgctaagttaattattggcttgcttattatcatcatttgcgtaaaagaaat |
10446096 |
T |
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| Q |
149 |
tgacatatttgctctaaagttttttattaacgtaaccaagttctagtaaaagggacatgccaccatacaatccagttgtcatattgatattttcttttct |
248 |
Q |
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| T |
10446095 |
tgacatatttgctctaaagttttttattaacgtaaccaagttctagtaaaagggacatgccaccatacaatccagttgtcatattgatatttt-ttttct |
10445997 |
T |
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| Q |
249 |
ctcg |
252 |
Q |
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|||| |
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| T |
10445996 |
ctcg |
10445993 |
T |
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