View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_63 (Length: 266)
Name: NF1077_low_63
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 26 - 231
Target Start/End: Original strand, 49289807 - 49290012
Alignment:
| Q |
26 |
agatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagc |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49289807 |
agatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagc |
49289906 |
T |
|
| Q |
126 |
agtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49289907 |
agtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggt |
49290006 |
T |
|
| Q |
226 |
ggtgag |
231 |
Q |
| |
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|||||| |
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| T |
49290007 |
ggtgag |
49290012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 26 - 231
Target Start/End: Original strand, 49296758 - 49296963
Alignment:
| Q |
26 |
agatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagc |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296758 |
agatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagc |
49296857 |
T |
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| Q |
126 |
agtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296858 |
agtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggt |
49296957 |
T |
|
| Q |
226 |
ggtgag |
231 |
Q |
| |
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|||||| |
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| T |
49296958 |
ggtgag |
49296963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 26 - 231
Target Start/End: Original strand, 49303488 - 49303693
Alignment:
| Q |
26 |
agatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagc |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303488 |
agatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagc |
49303587 |
T |
|
| Q |
126 |
agtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49303588 |
agtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggt |
49303687 |
T |
|
| Q |
226 |
ggtgag |
231 |
Q |
| |
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|||||| |
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|
| T |
49303688 |
ggtgag |
49303693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 6568113 - 6567970
Alignment:
| Q |
34 |
tcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatg |
133 |
Q |
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||||| ||| ||||||||||||||||||||||| ||||||||| |||| ||||| || || || || |||||||||| |||||||||| ||| ||| |
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| T |
6568113 |
tcagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatg |
6568014 |
T |
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| Q |
134 |
aacttgatgagataccaagagggagagagattgaacaagcactt |
177 |
Q |
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||||||||||||| |||||||||| ||||||||||||||| |
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| T |
6568013 |
aacttgatgagatgagtggagggagagacattgaacaagcactt |
6567970 |
T |
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