View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_66 (Length: 252)
Name: NF1077_low_66
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_66 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 27008382 - 27008184
Alignment:
| Q |
1 |
ttccatggggtacgtgtgatcatattagtcatagaatatattctctaaataatcaagtatggtctcaatttaaagtaaaagtaatcaaccttgcacttat |
100 |
Q |
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| T |
27008382 |
ttccatggggtacgtgtgatcatattagtcatacaatatattctctaaataatcaagtatggtctcaatttaaagtaaaagtaatcaaccttgcacttat |
27008283 |
T |
|
| Q |
101 |
taaaaaaaatatttgtctagtctaattgatctttctgattttatnnnnnnnnnnnnntgtgtattttctaaagtaccattgataatatttattgctaaag |
200 |
Q |
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| T |
27008282 |
ttaaaaaaatatttgtctagtctaattgatctttctgattttat----aaaaaaaaatgtgtattttctaaagttccattgataatatttattgctaaag |
27008187 |
T |
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